Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00646 ATGGATGTTTGCCGAAATGTATCAGTTTCTTCAAGTGAGTGTCAGCAAGAGCTTCCCACCCTTGATGACCTTTTCTCTCATCAGAACACGGAAGTGGATTTTGGCCTGGAATGGTTATCAGTGTTTGTGGAAGACTGTTTCTCTAGTAGGCCAAGCTGCCTCTTGGCACCTGGTGGTGTTCAAACCACAAGCACTAGCACAAGCACCAAGCCTTCTTCAGGCACTATATTGCAAAGACCCCAACAATTAAGTCATCACTGTCCTTTGCAGAATTTTGCTGTGCCAGGGAAAGCAAGGAGCAAGAGAAAGAGAAAGAGGCTTTCAGCCCCTAGAACAACAAAACACACCCTAAGCACATGGTCGCAACATTTCAGCACACAGAATGATGGGGTGAGTTCTGACCCTCCTCTTTTGAAACAAGCTTATTGGTTGGCTGATAGTGAACTCATTGTGCCTAAGAAGAAGGATGTTGAGCAAGAAGAGGAGGAGGGGGTTGTTGTGGTTGTGAAGAAGGAGAAATTGGGGgattattgtgatcatgatgagggtgatgaaattaacaataataatagtaataaTGATGATAATGTGCAGCACCCAATTCCAAGAAGGTGCACACATTGTCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTTCAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGCCCTACTTTTGTAAGCTATTTGCATTCCAATTCACACAAGAAAGTCATGGAGATGAGAATGGGTGTTGTTGGTGTTTTTTCTACAGACAACAACAAGTAG 843 0.4353 MDVCRNVSVSSSECQQELPTLDDLFSHQNTEVDFGLEWLSVFVEDCFSSRPSCLLAPGGVQTTSTSTSTKPSSGTILQRPQQLSHHCPLQNFAVPGKARSKRKRKRLSAPRTTKHTLSTWSQHFSTQNDGVSSDPPLLKQAYWLADSELIVPKKKDVEQEEEEGVVVVVKKEKLGDYCDHDEGDEINNNNSNNDDNVQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRFKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMGVVGVFSTDNNK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00646 280 MobiDBLite consensus disorder prediction 97 111 - -
Gma02g00646 280 CDD ZnF_GATA 204 251 IPR000679 GO:0006355|GO:0043565
Gma02g00646 280 Pfam GATA zinc finger 205 239 IPR000679 GO:0006355|GO:0043565
Gma02g00646 280 ProSitePatterns GATA-type zinc finger domain. 205 230 IPR000679 GO:0006355|GO:0043565
Gma02g00646 280 Gene3D - 196 265 IPR013088 GO:0006355|GO:0008270
Gma02g00646 280 MobiDBLite consensus disorder prediction 95 117 - -
Gma02g00646 280 ProSiteProfiles GATA-type zinc finger domain profile. 203 235 IPR000679 GO:0006355|GO:0043565
Gma02g00646 280 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 274 - -
Gma02g00646 280 PANTHER GATA TRANSCRIPTION FACTOR 1 274 - -
Gma02g00646 280 SMART GATA_3 199 253 IPR000679 GO:0006355|GO:0043565
Gma02g00646 280 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00646 Gma-Chr2 6315396 6317093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00646 36 267 C2C2-Gata Transcription Factor Family AT4G32890 40.506 2.30e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma02g00646 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00646 - - gmx:100783976 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00646 02 6315396 6317093 Gma02g00646 02 6315396 6317093 ECH
Gma16g01393 16 32945406 32947273 Gma02g00646 02 6315396 6317093 GST
Gma19g01071 19 38793033 38794483 Gma02g00646 02 6315396 6317093 PCT
Gma16g00382 16 3983280 3984753 Gma02g00646 02 6315396 6317093 PCT
Gma02g00646 02 6315396 6317093 Gma19g01071 19 38793033 38794483 PCT
Gma02g00646 02 6315396 6317093 Gma16g00382 16 3983280 3984753 PCT