Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00643 ATGGAGAATGATATAGAGGGTGTGCATTGGTGCAACATATGCTCTAAAATGGTGAATCCAATGAGTGATGATGAGAACATATGCCCGTTTTGTGAGACAGAATTTTCTGAGGTAATGGACAACCTAAGGGACCAGAATGATGTTTTTGACTTAAGGTCAGCTTGGGTGTTCTCGCTTTACGCCCCAATTTTTCTCGGTTTGATGGGTGCTTTCAGCCCTTCCCTAGCAAGAATTGCTCCACATGGAGGCAGCAGCAGCTCAAGGGGTGTGGAAGAAGAGGTTGAGCAAGAGAGGGAAAATGAACTTGTGCTTGGGAGAAGGAGAAGAACTTCAACTTACATGATGCACCTCTTTCGCGGTCTTCACATTAGGATGGTGTCTGAACTTGAAAACCCTGAAGACAATAATAGGAACATGGATGGCAGCAGCATACTTGTGATTGATCCATTCAGTGAAGGTGCATTGATTGTGAGGGGACCTAACTTGAGCCACACAACAAGTTCGAATGAGAATAATGCTGTCGGAAGCTCCTTGAATGACCTTGTGGTAGGATCTGGCTTTGATTTGTTGCTACAGCATTTGGCACAGATTGGTCCTGGTGGCTATTCAAGTGTTAACCCTCCGGCACAGAAGGCGGCAATTGAGGCATTGCCTAGTGTGACTAGTGAGGAGAAGTTTCAGTGCCCAGTGTGCTTGGAGGATGTTGAGGTTGGGAGTGAAGCAAAGGAGATGCCATGTATGCACAAGTTCCATGGTGACTGCATTGTCTCATGGCTCAAGCTTCATGGCTCTTGTCCAGTTTGCAGGTTTCAGATGCCATCTGAGGATTCAACTCTTGAAGCCAATGTGGACAATCGGAACAGTGAGCTGGTCAGAGCTGGAGAAGAGAGACCCAGAAATGGAAGGAGGAACTGGTTTCCAGTGCTGCAATCGTTTAACAATTTTCTTCCTTATCCttga 960 0.4615 MENDIEGVHWCNICSKMVNPMSDDENICPFCETEFSEVMDNLRDQNDVFDLRSAWVFSLYAPIFLGLMGAFSPSLARIAPHGGSSSSRGVEEEVEQERENELVLGRRRRTSTYMMHLFRGLHIRMVSELENPEDNNRNMDGSSILVIDPFSEGALIVRGPNLSHTTSSNENNAVGSSLNDLVVGSGFDLLLQHLAQIGPGGYSSVNPPAQKAAIEALPSVTSEEKFQCPVCLEDVEVGSEAKEMPCMHKFHGDCIVSWLKLHGSCPVCRFQMPSEDSTLEANVDNRNSELVRAGEERPRNGRRNWFPVLQSFNNFLPYP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00643 319 Pfam Ring finger domain 227 269 IPR001841 -
Gma02g00643 319 SUPERFAMILY RING/U-box 218 275 - -
Gma02g00643 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 275 IPR013083 -
Gma02g00643 319 ProSiteProfiles Zinc finger RING-type profile. 228 269 IPR001841 -
Gma02g00643 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 318 - -
Gma02g00643 319 SMART ring_2 228 268 IPR001841 -
Gma02g00643 319 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 2 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00643 Gma-Chr2 6289128 6290087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00643 90 292 C3H Transcription Factor Family AT1G26800 30.583 9.78e-24 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00643 K11982 - gmx:100787884 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01390 16 32917151 32918119 Gma02g00643 02 6289128 6290087 GST