Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00616 ATGTCTGACAGTCAAGAATCTGACAAGAACATTGAGATATGGAAGATCAAGAAATTGATCAAGGCTCTGGAAGCTGCTCGAGGTAATGGTACCAGCATGATTTCTCTGATAATGCCTCCACGCGATCAAATTTCCCGGGTCACTAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAACATCAAAAGTAGGGTGAACCGACAGTCTGTGTTGGGAGCCATTACTTCTGCTCAGCAGAGGTTGAAACTATATAACAAGGTCCCTCCAAATGGTTTGGTTCTTTACACTGGAAccatcgtcactgaagatggcaaggaaaagaaggtgacaattGATTTTGAGCCTTTCAAACCTATCAATGCATCACTGTACCTCTGTGATAACAAGTTTCACACAGAAGCACTGAATGAACTTTTAGAATCTGATGACAAGTTTGGTTTCATTGTGATGGATGGAAATGGCACCCTTTTTGGGACTTTAAGTGGAAACACTCGTGAGGTGCTTCACAAATTTACTGTTGATCTACCAAAGAAGCATGGTAGAGGAGGTCAATCAGCTTTGCGTTTTGCTCGACTTAGGATGGAAAAGCGGCACAACTATGTTAGGAAAACTGCAGAACTTGCTACTCAGTTTTTCATCAATCCTGCCACCAGTCAACCTAATGTTTCTGGACTTATACTTGCTGGTTCTGCTGACTTCAAGACTGAGTTGAGTCAGTCAGATATGTTTGACCCTCGATTGCAAGCAAAAATATTGAATGTGGTAGATGTTTCTTATGGTGGGGAAAATGGATTCAATCAAGCTATTGAGCTATCTGCAGAGATTTTATCAAATGTGAAGTTCATTCAAGAGAAACGCTTGATAGGGAAATATTTTGAAGAGATCAGCCAGGACACTGGGAAATATGTCTTTGGGGTTGAGGACACTTTGAAGGCACTGGAGATGGGTGCTGTGGAAACACTCATTGTATGGGAAAATTTGGATATTAATAGGTATGTGCTGAAAAATGGTATCACTGGTGAGATTGTCATTAAGCACTTGAACAAGGAACAAGAGGCTAATCAAAGCAACTTCCGCGATTTGGCCACTTCTGCAGAGTTGGAAGTTCAGGAGAAGATGCCCTTGCTCGAGTGGTTTGCCAATGAGTACAAAAAATTTGGATGCTCCCTGGAATTTGTGACCAACAAATCTCAAGAGGGCTCCCAATTCTGCAGAGGGTTTGGTGGCATTGGTGGAATTCTTCGTTACCAGCTTGACATCAGATCATTTGATGAGTTATCTGATGATGGAGAAGTGTATGAGGATTCTGATTAA 1314 0.4033 MSDSQESDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVEDTLKALEMGAVETLIVWENLDINRYVLKNGITGEIVIKHLNKEQEANQSNFRDLATSAELEVQEKMPLLEWFANEYKKFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDDGEVYEDSD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00616 437 SMART eRF1_1_2 4 140 IPR005140 -
Gma02g00616 437 Pfam eRF1 domain 1 18 138 IPR005140 -
Gma02g00616 437 Gene3D eRF1 domain 2 136 277 IPR042226 -
Gma02g00616 437 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Gma02g00616 437 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 437 - -
Gma02g00616 437 Gene3D - 279 437 IPR029064 -
Gma02g00616 437 SUPERFAMILY Translational machinery components 142 276 - -
Gma02g00616 437 Pfam eRF1 domain 2 144 277 IPR005141 -
Gma02g00616 437 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 437 IPR004403 GO:0003747|GO:0006415
Gma02g00616 437 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 12 417 IPR004403 GO:0003747|GO:0006415
Gma02g00616 437 SUPERFAMILY L30e-like 278 420 IPR029064 -
Gma02g00616 437 Pfam eRF1 domain 3 281 418 IPR005142 -
Gma02g00616 437 Gene3D eRF1 domain 1 1 135 IPR024049 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00616 Gma-Chr2 6069125 6073490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00616 1 437 Eukaryotic Initiation Factors Gene Family AT3G26618 92.906 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00616 K03265 - gmx:100786788 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01371 16 32659996 32668410 Gma02g00616 02 6069125 6073490 GST
Gma19g01047 19 38274391 38275311 Gma02g00616 02 6069125 6073490 PCT
Gma16g00402 16 4277756 4280446 Gma02g00616 02 6069125 6073490 PCT
Gma02g00616 02 6069125 6073490 Gma19g01047 19 38274391 38275311 PCT
Gma02g00616 02 6069125 6073490 Gma16g00402 16 4277756 4280446 PCT