Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00614 ATGACCGATTCTGACGCCAATCACAATGACCCATCTCTCGCTACCGATACCGATGCACCCAATGATGCTGAAGATGAGGTCAAGTTGAGGTCTAGGGACCAAAGACTGGCTCTGCCAGGTGAGCCCAAGTGTATTATATGCGGCCGCTACGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAGTGCAAACAAGCACTGCTTTGCAGGATTGCCAAATCGTCGTCTCCACCACCTAAAAGGATTCCTGCAGCTGATGAGTGCTTTTATGTTAAAGATGCTGATTACGAATCGGGGACTGCATCTATGGCTAGTGATCTTAGAAAGAAACTTGACATTCATGTGAAGGGTGATGTAGTGGCACCGGTTTTGTCATTCTCTGCCTGTAACCTCCCTGACAAGCTTCTTCACAATATAGAAGCAGCAGGATATGAAATGCCTACACCTGTCCAGATGCAAGCAATCCCAGCTGCTTTGACGGGAAAAAGCATGCTCCTTTTGGCCGATACAGGATCTGGGAAGTCTGCTTCGTTTCTTATTCCAATAGTTTCTCGTTGTGCGATTCATCGTCGACAATATGTTTCAGATAAGAAGAATCCTTTAGCTTTGGTGTTAACTCCTACCAGAGAGCTCTGTATGCAGGTTGAAGAGCATGCTAAGTTGCTTGGAAAGGGTATGCCTTTCAAAACCGCTCTTGTGGTTGGCGGTGATGCCATGGCTGGACAACTCCATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCAGGAAGGCTTGTTGATCTTTTAACGAAGCATGAGATTGACTTAGATGATGTGATGACTTTCGTTGTGGATGAGGTGGACTGTATGCTGCAAAGGGGCTTTAGAGATCAGGTCATGCAGATATATAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCTACAATGTCTAATGATTTAGAGAAGATGATTAACACTCTGGCGAAAGGTACGGTGGTTATCTCTGTTGGAGAACCTAATACACCGAATAAGGCTGTGAAGCAGCTAGCTATTTGGGTAGAGTCAAAGGAAAAGAAGCAGAAGCTGTTTGAAATTTTGGAAAGAATTAAAGCAGTTTCCATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAACAATGCAGTCCCTTTTGGTGGGGGAGGTCCCCGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGGGTTGATCTGCTTGGTGTAAGGCAGGTGATTGTATTTGACATGCCTAATAACATTAAGGAGTATGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAGGAAGGTCAAGGCATAGTTTTTGTGAATGAGGAGAATAAGAATATATTTTCAGAATTAATTGAAGTTCTGAAATCTGGTGGAGCAGCTGTGCCTCGGGAGCTTGCCAATTCACGGTATGCCACAGGAGTTTTCTCTGGTGGCAAGGGTTCAAAGAAGAGAAAGCATACAGGATGA 1497 0.4489 MTDSDANHNDPSLATDTDAPNDAEDEVKLRSRDQRLALPGEPKCIICGRYGEYICDETDDDVCSLECKQALLCRIAKSSSPPPKRIPAADECFYVKDADYESGTASMASDLRKKLDIHVKGDVVAPVLSFSACNLPDKLLHNIEAAGYEMPTPVQMQAIPAALTGKSMLLLADTGSGKSASFLIPIVSRCAIHRRQYVSDKKNPLALVLTPTRELCMQVEEHAKLLGKGMPFKTALVVGGDAMAGQLHRIQQGVELIVGTPGRLVDLLTKHEIDLDDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYSATMSNDLEKMINTLAKGTVVISVGEPNTPNKAVKQLAIWVESKEKKQKLFEILERIKAVSIHGEKSMKERRETMQSLLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNNIKEYVHQIGRASRMGEEGQGIVFVNEENKNIFSELIEVLKSGGAAVPRELANSRYATGVFSGGKGSKKRKHTG 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00614 498 CDD SF2_C_DEAD 339 449 - -
Gma02g00614 498 Gene3D - 94 336 IPR027417 -
Gma02g00614 498 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Gma02g00614 498 MobiDBLite consensus disorder prediction 1 16 - -
Gma02g00614 498 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 479 IPR001650 -
Gma02g00614 498 SMART helicmild6 358 440 IPR001650 -
Gma02g00614 498 Gene3D - 337 481 IPR027417 -
Gma02g00614 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 477 IPR027417 -
Gma02g00614 498 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 335 IPR014001 -
Gma02g00614 498 Pfam Helicase conserved C-terminal domain 347 440 IPR001650 -
Gma02g00614 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 337 IPR027417 -
Gma02g00614 498 Pfam DEAD/DEAH box helicase 152 323 IPR011545 GO:0003676|GO:0005524
Gma02g00614 498 MobiDBLite consensus disorder prediction 1 32 - -
Gma02g00614 498 SMART ultradead3 147 350 IPR014001 -
Gma02g00614 498 Gene3D - 23 80 - -
Gma02g00614 498 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 23 482 - -
Gma02g00614 498 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 23 482 - -
Gma02g00614 498 Pfam HIT zinc finger 42 68 IPR007529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00614 Gma-Chr2 6057118 6059472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00614 122 477 Eukaryotic Initiation Factors Gene Family AT3G19760 27.273 1.62e-49 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00614 K19466 - gmx:100781473 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01369 16 32649520 32651720 Gma02g00614 02 6057118 6059472 GST