Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00548 ATGGGAATAGCAACACCTTCTTCATCGCTTCCTTCCATTCTCTCTCAATCGAAGACACAACAACAAATACATCATTCGAATTCTTCTATGTCCCAAGATTACCACCACCACCACCAAGGAATCTTCAGCTTCCCGAATGGGTTCGAAAGATCGGCGGCGGCCACTACGATGACTCACCAAGACCCTCACCAACAGCAGATTCGGAGGGACAAAGTGAGGGTGCAAGGCTTCGAGCCACCGCCGTCGCATCAAACTTTGGTACCTATAGAGGAAGACGAATCGGGAAGCCTCCCGGTGTACGAAACCGCCGGGATGTTATCGGAGATGTTCAATTTCACTCCCGGCGCCACGGAATTATTGGAACAGCAACAGCAGCAACAACAACCAATGGCGACGACGACGGCCAGGGCAGTGGGCAGTGGTGGCAGCGAGTGGTACGGAAACAGACAGGGGATGTTAAGCAATTTGGGACCGTTGGGAGATTCCAAGAATCATCATCATCATGGCAGTGTGAATAGCCGTGACAGTAGCAGCAGCAGCATAGTTCAGAATCAGCATCATCATCATCACAACCACCACCATCATCAAATGTCGAGCATTAATGCGGACTCAGCAGCTGCCATGCAGCTTTTTCTCATGAACCCTCAAACCACCAGATCCCCTTCTCCCCCTCCACCTCCTCCTCCTTCTTCTTCTACTCTCCACATGCTGCTTCCTAATACTTTCCCTCCTGGCTCAGGAGGGTCTTTCGGTCAATTCACGTGGCTCCCCGACACCACTCAAGAAGGAGGACCGAGTACAGTCGTGGAAGGCCCTGGCCACGGTCACGGTCAAGGCCTTTCTCTGTCCCTGTCCTCCTCCATAGAAGCCGCAAAAGCGGAGGAACTAAGGATGGGGGATAGTGGGTTTTTGTATTACAATCAAGCAAGTGGAGGACCCTCTTCCTATAAGAGTACTCTTGGGGGTCATCACCACCAAGCATTGTTGGGACAAGCCCACCAGGGAAATGTTGGGTTTGGAGCAGCATCATCGTCTACATCATCATTAGGTGTTGTGAATGCGTTGAGGAATTCAAAATATGCCAAGGCTGCTCAGGAGTTGCTTGAAGAGTTTTGCAGTGTTGGGAGAGGCCAGTTCAAGAAGAACAAGTTTAACAGACAACTCTCAAACCCTAGTTCCAATCTTGGAGGTAGTGGCGGTGGTGGCGGCGGCGCTTCTTCGTCTTCATCAAAGGATATTCCTCCTTTGTCAGCAGCTGATAGGATTGAGCATCAAAGGAGGAAGGTCAAACTCCTAACCATGCTTGACGAGGTGGATAGGAGATACAGCCACTACTGCGAGCAAATGCACATGGTGGTGAACTCATTCGACATGGTGATGGGGTTCGGCGCGGCGGTGCCATACACGGCGCTGGCTCGGAAAGCAATGTCTCGTCACTTTAGGTGCCTGAAGGATGCAATAACAGCACAATTGAAGCATAGTTGTGAGGTGTTGGGAGAGAAAGATGGTGCAGGGAACTCGGGGTTGACCAAAGGAGAGACACCAAGGCTGAAGATGTTGGAACAAAGCTTGAGGCAGCAAAGAGCGTTTCATCAAATGGGGATGATGGAACAGGAGGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTAGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCGAGGGTTCGTTTGTGGAAACCCATGGTGGAAGACATGTACCAACAAGAACTCAAAGAGGCCGAAGGGGCAGAAGAAGATAGAGAGAGGAACCAAAGCAGTAGCAACAACAGTGGCCACCAATTGGCACAAACTCCAACACCCTCAACCACGGCATCGACAGCAACAGCGCCACCACCAACAACAACGACACCACCAAACGGAAAAAGATCCGATACCGAAAGCGACCCTTCACTCGCACAGATAAATAACACCACCAGCACCACCGTCATGACGGTCACCGCCACTCAGGTGACGCCACCGTCGGAGCTTCCCCGAACAATGGTGGCCGATGAATCGTGCAGGCATGGTAGCCTCGTTGCAACGGATTTTGGGACCGCTTCTGCTGCTTCTGACATTGGCTCCACTCTGATTAGGTTTGGGACCACCACCGGTGACGTGTCACTCACGCTAGGGCTTCGCCACGCCGGGAACATGCCGGAGAAAACTCCGTTCTCCGTTAGGGACTTTGGAGGCATTTAA 2301 0.5159 MGIATPSSSLPSILSQSKTQQQIHHSNSSMSQDYHHHHQGIFSFPNGFERSAAATTMTHQDPHQQQIRRDKVRVQGFEPPPSHQTLVPIEEDESGSLPVYETAGMLSEMFNFTPGATELLEQQQQQQQPMATTTARAVGSGGSEWYGNRQGMLSNLGPLGDSKNHHHHGSVNSRDSSSSSIVQNQHHHHHNHHHHQMSSINADSAAAMQLFLMNPQTTRSPSPPPPPPPSSSTLHMLLPNTFPPGSGGSFGQFTWLPDTTQEGGPSTVVEGPGHGHGQGLSLSLSSSIEAAKAEELRMGDSGFLYYNQASGGPSSYKSTLGGHHHQALLGQAHQGNVGFGAASSSTSSLGVVNALRNSKYAKAAQELLEEFCSVGRGQFKKNKFNRQLSNPSSNLGGSGGGGGGASSSSSKDIPPLSAADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNSFDMVMGFGAAVPYTALARKAMSRHFRCLKDAITAQLKHSCEVLGEKDGAGNSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEEDRERNQSSSNNSGHQLAQTPTPSTTASTATAPPPTTTTPPNGKRSDTESDPSLAQINNTTSTTVMTVTATQVTPPSELPRTMVADESCRHGSLVATDFGTASAASDIGSTLIRFGTTTGDVSLTLGLRHAGNMPEKTPFSVRDFGGI 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00548 766 Gene3D - 544 606 - -
Gma02g00548 766 Pfam Associated with HOX 355 488 IPR006563 -
Gma02g00548 766 Pfam Homeobox KN domain 558 597 IPR008422 GO:0003677|GO:0006355
Gma02g00548 766 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 84 755 - -
Gma02g00548 766 MobiDBLite consensus disorder prediction 384 414 - -
Gma02g00548 766 CDD homeodomain 541 602 IPR001356 GO:0003677
Gma02g00548 766 MobiDBLite consensus disorder prediction 130 200 - -
Gma02g00548 766 SUPERFAMILY Homeodomain-like 543 608 IPR009057 -
Gma02g00548 766 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 755 - -
Gma02g00548 766 SMART HOX_1 541 605 IPR001356 GO:0003677
Gma02g00548 766 MobiDBLite consensus disorder prediction 1 36 - -
Gma02g00548 766 MobiDBLite consensus disorder prediction 659 696 - -
Gma02g00548 766 MobiDBLite consensus disorder prediction 215 243 - -
Gma02g00548 766 SMART prehox3 349 489 IPR006563 -
Gma02g00548 766 MobiDBLite consensus disorder prediction 627 651 - -
Gma02g00548 766 ProSiteProfiles 'Homeobox' domain profile. 538 601 IPR001356 GO:0003677
Gma02g00548 766 MobiDBLite consensus disorder prediction 218 233 - -
Gma02g00548 766 MobiDBLite consensus disorder prediction 1 44 - -
Gma02g00548 766 MobiDBLite consensus disorder prediction 613 697 - -
Gma02g00548 766 MobiDBLite consensus disorder prediction 384 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00548 Gma-Chr2 5472504 5479922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00548 349 766 Homeobox Transcription Factor Family AT2G23760 54.202 7.34e-147 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma02g00548 POX 7.4e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00548 - - gmx:100807143 1289.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00548 02 5472504 5479922 Gma02g00548 02 5472504 5479922 ECH
Gma02g00548 02 5472504 5479922 Gma16g01311 16 31806142 31814600 ECH
Gma16g01311 16 31806142 31814600 Gma02g00548 02 5472504 5479922 GST
Gma01g01829 01 53907401 53915369 Gma02g00548 02 5472504 5479922 PCT
Gma11g00572 11 4767037 4774964 Gma02g00548 02 5472504 5479922 PCT
Gma02g00548 02 5472504 5479922 Gma01g01829 01 53907401 53915369 PCT
Gma02g00548 02 5472504 5479922 Gma11g00572 11 4767037 4774964 PCT