Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00547 ATGGGTTGGTTTACTAAGTTGCTTAAGGGATCCAACCGTAAATCGTCAGGAGGAAGATATCATGGGAAATATGAAGATGACAGAATATCGGACAATCTTGATTGTTCAGCGGATGATTTGACGGATATTGAGAAAGAAGAAATTGGTCGGGCAATAGCACTCTCTCTTTCAGAGGCAGATAAGAAAGGGAAAAAAGTTATTGAGGACGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTAGCGACGAGGAAGCTGAATCTGTTGGTGAAGTTCAGCAAGATGAAGATGACCATCATGCTAAAATTCAACAGGATGAAGACAAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGAGACTGATTCTTTATTTCAACCTTTTGCACACTTATTTCCACCTGTATACAGAATCTGTTCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCTATGTCTGGAAATCGTCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCAAGATGTGATGTTTGCAAGAACTTTATTCCACCAAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGTCAGTGGATACCAAATATCTGTTGCTTGACGATGGTCGAAAGCTGTGCCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTCGAAATACAAGAGTTTTATGAGGGTTTACATATGAAGATAGAGCAGCAAGTTCCGATGCTTTTGGTTGAGAGACAAGCACTGAACGAGGCTATGGAGGGAGAGAAGAATGGTCATCATCACTTACCTGAAACCAGAGGACTTTGCTTGTCCGAAGAGCAAACTGTTCCCACTATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACCGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACTGGATCAATCCTGGCTCACGAAATGATGCACGCATGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATgtggttagaatcagagattattcctggcactggggatgaaggtgcatcatcatcatcatcatcatcatcatcatcctcatcatcctcatcgccttcgtcttcttcatcatcaaagaagggtAAACGTTCCGACTTTGAGAAGAAACTAGGTAAGTACTTCAAACACCAGATTGAGTCAGATAGCTCAGCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCTGTGGCTAAGGGGGTGCTGATGAGGAGTGATGAAATGTGCAGTTTCTGCAAGTTCCAGATAAATTTTGAAGTTGCAATGGAAAAAGGTGGTATCTCAGTATTTTTGTGGTGA 1641 0.3924 MGWFTKLLKGSNRKSSGGRYHGKYEDDRISDNLDCSADDLTDIEKEEIGRAIALSLSEADKKGKKVIEDDSESEDDELCPLSDEEAESVGEVQQDEDDHHAKIQQDEDKHLDEVQLEEDEQLARAIQESLSISSPPRSETDSLFQPFAHLFPPVYRICSGCNAEIGHGRFLSCMGGYWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKNFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRLESVDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVPTILRRPRIGAGYQLIDMITEPFRLVRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLESEIIPGTGDEGASSSSSSSSSSSSSSSPSSSSSSKKGKRSDFEKKLGKYFKHQIESDSSAAYGDGFREGNQAVAKGVLMRSDEMCSFCKFQINFEVAMEKGGISVFLW 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00547 546 Pfam LIM domain 158 212 IPR001781 -
Gma02g00547 546 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 519 - -
Gma02g00547 546 MobiDBLite consensus disorder prediction 70 92 - -
Gma02g00547 546 Gene3D Cysteine Rich Protein 154 215 - -
Gma02g00547 546 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Gma02g00547 546 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Gma02g00547 546 CDD LIM_DA1 158 210 - -
Gma02g00547 546 MobiDBLite consensus disorder prediction 59 102 - -
Gma02g00547 546 MobiDBLite consensus disorder prediction 10 31 - -
Gma02g00547 546 SMART lim_4 157 209 IPR001781 -
Gma02g00547 546 SMART uim 43 62 IPR003903 -
Gma02g00547 546 SMART uim 117 136 IPR003903 -
Gma02g00547 546 MobiDBLite consensus disorder prediction 446 473 - -
Gma02g00547 546 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Gma02g00547 546 MobiDBLite consensus disorder prediction 445 477 - -
Gma02g00547 546 Pfam Protein DA1 307 516 IPR022087 -
Gma02g00547 546 PANTHER PROTEIN DA1-RELATED 2 1 519 IPR045218 -
Gma02g00547 546 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 183 - -
Gma02g00547 546 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00547 Gma-Chr2 5427287 5432453 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma02g00547 DA1-like 2.1e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00547 - - gmx:100806605 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00547 02 5427287 5432453 Gma02g00547 02 5427287 5432453 ECH
Gma16g01309 16 31745913 31750281 Gma02g00547 02 5427287 5432453 GST
Gma01g01828 01 53874607 53882301 Gma02g00547 02 5427287 5432453 PCT
Gma11g00574 11 4796617 4801426 Gma02g00547 02 5427287 5432453 PCT
Gma02g00547 02 5427287 5432453 Gma01g01828 01 53874607 53882301 PCT
Gma02g00547 02 5427287 5432453 Gma11g00574 11 4796617 4801426 PCT