Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00546 ATGTACCAGGCCGAATTAACCTCCGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTACATGTCCACCAAGCTCATCTCAGGGACGAGCCTTCAGCTCTTAAGGCGCTACGATCACCGACCAGAAAGTCACAGAGCACAGTTGCTCGATGATGATGGTCCCTCTTATGTTCGCGTGTTTGTTCGTGTTTTGCGTGACATTTTCAAGGAAGATACTGTGGAGTATGTTTTGGCACTGATAGATGAAATGCTTGCTGCAAACCCGAAGAGAGCAAGACTGTTTCATGATAGTGCCCTTGCTGATGAAGATACTTATGAGCCTTTCCTAAATCTGTTGTATACTTGTACAAGTTATTACCTTCCCAGTTATTGCAAAATTTCACCATTTTCTGATTATAGTGTCAGGCCAAAAAATCAGAATGGCGTTGTGTCTAATGGAGAAGCATCAAATGGAAAGAAGCCATTTACCACTATTGATGATGTTTTAATAGGATTGGTAAAATGGCTTTGTGAACAGTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGGCTGATGGGGTCAAGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCAAGAACCCTTCCGCGACTTATTGATGTTGTCAGGAGTTCTACAAAAGAGAAGGTGGTTAGAGTTGTTGTCTTGACTCTTAAGAATTTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGACCTTCAGCTGGCACAAGTTGTCCTGAGTTTAAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCCCTGAATTCCTTGGAAGAAGGGCTTAAGGATAATATCAAGAGACTAAGTTCTTTTGATATGTACAAGCAAGAAGTTCTCCTTGGCCATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGATTCTAAGGGTCCTACTAACAATTTTGGACACGTCCAGTGATCCAAGGACTCTGGCTGTTGCTTGCTATGACCTTTCACAGTTTATCCAGCATCATTCTGCTGGACGGATCATTGTGTCAGACCTCAAGGCAAAAGAACGAGTTATGAAACTAATGAATCATGAAAATGTTGAAGTTACTAAAAATGCACTGCTCTGCATCCAGCGGCTTTTCTTAGGTGCAAAGTATGCAAGCTTCTTGCAGGTTTAA 1362 0.4236 MYQAELTSEQVLRRDIPWETYMSTKLISGTSLQLLRRYDHRPESHRAQLLDDDGPSYVRVFVRVLRDIFKEDTVEYVLALIDEMLAANPKRARLFHDSALADEDTYEPFLNLLYTCTSYYLPSYCKISPFSDYSVRPKNQNGVVSNGEASNGKKPFTTIDDVLIGLVKWLCEQLKKPSHPIRGVPTAINCLATLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVRSSTKEKVVRVVVLTLKNLMSKGTLGAQMVDLQLAQVVLSLKAQAWSDEDLLEALNSLEEGLKDNIKRLSSFDMYKQEVLLGHLDWSPMHKDPIFWRENINNFEENDFQILRVLLTILDTSSDPRTLAVACYDLSQFIQHHSAGRIIVSDLKAKERVMKLMNHENVEVTKNALLCIQRLFLGAKYASFLQV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00546 453 Gene3D - 344 445 IPR038497 -
Gma02g00546 453 Gene3D - 4 332 IPR011989 -
Gma02g00546 453 SMART arm_5 242 283 IPR000225 GO:0005515
Gma02g00546 453 SMART arm_5 196 241 IPR000225 GO:0005515
Gma02g00546 453 SMART arm_5 403 443 IPR000225 GO:0005515
Gma02g00546 453 PIRSF V-ATP_synth_H 2 452 IPR004908 GO:0000221|GO:0046961|GO:1902600
Gma02g00546 453 Pfam V-ATPase subunit H 7 324 IPR004908 GO:0000221|GO:0046961|GO:1902600
Gma02g00546 453 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 3 453 IPR004908 GO:0000221|GO:0046961|GO:1902600
Gma02g00546 453 SUPERFAMILY ARM repeat 9 443 IPR016024 -
Gma02g00546 453 Pfam V-ATPase subunit H 331 442 IPR011987 GO:0000221|GO:1902600
Gma02g00546 453 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 3 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00546 Gma-Chr2 5419613 5425656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00546 1 452 Primary Pumps ATPases(2) AT3G42050 75.442 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00546 K02144 - gmx:100796479 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01308 16 31734575 31741161 Gma02g00546 02 5419613 5425656 GST