Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00535 ATGAATCATCAACTTATCGAAGACCATATGATGCTCTTCCCTTGGCTATGCCCTGGTGGTGCATTCACTGAAGTAACTCCTCAACAAGGGGAAAATAATAAGCCAAGGCACAAGCGAAATAGAAAGAATAGAGGAGGAGAAAATGGCACCATCATCACCAAGAAGAGAAAGCTCACCGTAGAGCAAATTAGTCTTCTTGAGCGAAATTTCAGCAATGAACATAAACTTGAGTCTGAAAGGAAGGACCAGCTCGCATTGGAGCTTAGTTTGGACCCTCGACAAGTTGCGGTGTGGTTTCAAAATAGACGTTCTCGTTGGAAGACTCAAAAATTGGAGGAAGAGTACTCCAATCTTAAGAATGTTCATGAAACCACTATGCTCGACAAATGTCATCTTGAGAATGAGGTGTTGAAGCTCAAGGAGCAGCTTTTGGAAACAAAGAAGGAGATTGAGCAGCTACTAGAGCGTGGTGAAAAAGCCCCAAGCAACAACTCCAGTTCCTCACAGTCAATGGAAGAAGCTGTGAACCCACCATTTCTTGGAGAGTTTAGGGTGGAAGAATATGATGATGGTGATGTGTTCTACATTCCAGAGACTCATCACATCAATGGGATGGAATGGATTAATCTGTACAATTGA 639 0.4272 MNHQLIEDHMMLFPWLCPGGAFTEVTPQQGENNKPRHKRNRKNRGGENGTIITKKRKLTVEQISLLERNFSNEHKLESERKDQLALELSLDPRQVAVWFQNRRSRWKTQKLEEEYSNLKNVHETTMLDKCHLENEVLKLKEQLLETKKEIEQLLERGEKAPSNNSSSSQSMEEAVNPPFLGEFRVEEYDDGDVFYIPETHHINGMEWINLYN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00535 212 Coils Coil 136 160 - -
Gma02g00535 212 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Gma02g00535 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 6 211 - -
Gma02g00535 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 6 211 IPR045224 GO:0003700
Gma02g00535 212 SUPERFAMILY Homeodomain-like 54 117 IPR009057 -
Gma02g00535 212 MobiDBLite consensus disorder prediction 154 174 - -
Gma02g00535 212 MobiDBLite consensus disorder prediction 24 48 - -
Gma02g00535 212 Pfam Homeodomain 54 107 IPR001356 GO:0003677
Gma02g00535 212 ProSiteProfiles 'Homeobox' domain profile. 54 109 IPR001356 GO:0003677
Gma02g00535 212 MobiDBLite consensus disorder prediction 158 174 - -
Gma02g00535 212 Gene3D - 48 117 - -
Gma02g00535 212 CDD homeodomain 54 110 IPR001356 GO:0003677
Gma02g00535 212 SMART HOX_1 52 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00535 Gma-Chr2 5313538 5315377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00535 1 211 Homeobox Transcription Factor Family AT4G36740 47.273 2.48e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gma02g00535 Homeodomain 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00535 K09338 - gmx:100803948 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00535 02 5313538 5315377 Gma02g00535 02 5313538 5315377 ECH
Gma01g01809 01 53692114 53694688 Gma02g00535 02 5313538 5315377 PCT
Gma11g00595 11 4988444 4990799 Gma02g00535 02 5313538 5315377 PCT
Gma02g00535 02 5313538 5315377 Gma01g01809 01 53692114 53694688 PCT
Gma02g00535 02 5313538 5315377 Gma11g00595 11 4988444 4990799 PCT