Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00533 ATGAGAGTTCCCTCATCCCCACAAGCTAGCAACAACCATGTCCTCCACACAAACAACAACCCTAACACCTTCACCTACGAACCCACCTCGGTCCTCGACCTATGCCGGAGCCCAAGCCCCGAAAAGAAGCTCACTGTTCCCAAGCCAGAACCACAACACAACAACCAGCTAGACCTGGATGATCATGTTTTGCCTAATTCTGATTGGTGGGAGTCCATCATGAAGGACTTAACCCTACCCGAAGACTCTCCCACTCCCCTTTTGAAAACCAATCCATCATGCATCCCTGATTTCCCACCTTCTTCTCAAGACCCATCCTTTGATCACCCCACTCCTGACTTCACCTCTCTCTCCGAAATCTACAACCAAAACATCCCCTTCAATTACCCCTCCAACACTTTAGAACCTTCCTTTCATGACCTTAACCATAGCCTCCACCCCCACAACAACAACTGGGACTTCATCGAAGAGTTTATCCGCGCCGCCGATTGCTACGACAGCAGCCACTTCCAGCTGGCTCAAGCCATACTTGAGCGGCTCAACAACCGGCTTCTTCGCTCGCCCATGGGTAAGCCGCTCCACCGAGCCGCGTTTCACTTCAAAGACGCCCTTCAGTCCATTCTATCCGGTTCGAACCGGAACGGAAACGGTTCGAACCTCCTTTCCTCCATGGCGGAGATTGTTCAGACAATTAAAACGTACAAGGCCTTTTCGGGAATTTCACCCATCCCAATGTTCTCCATCTTCACCACCAATCAAGCCCTACTTGAAACCCTAAATGGATCTTCATTTGTCCACGTTATCGATTTCGAGATTGGGCTTGGAATTCAATACGCTTCTCTTATGAAAGAGATTGCTGAGAAGGCCGGTCCCGGAACCGCGCCGCTCCTTCGCATCACCGCCGTCGTGCCGGAGGAGTACGCCGTCGAGAGCCGCCTGGTCCGCCAGAATCTCAACCAGTTCGCGCAGGATCTAGGGATCAGCGCGCAGGTGGACTTCGTGCCGCTTCGGACCTTTGAGACGGTGTCGTTCAAGGCCGTGAGGTTCATCGACGGCGAGAAGATCGCCGTGTTGTTGTCGCCAACGATTTTCAGCCGCCTCGGAGGCAACGGAGGCAGTGTCGGCGCGTTCCTCGCCGACGTGAGGAGGATGGCTCCAGGAGTGGTGGTGTTCGTGGACGGTGAGGGGTGGACGGAGGCGGCGGCGGCGGCTTCGTTCCGGCGTGGCGTGGTGAGCAGTCTGGAGTTTTATTCCATGATGCTGGAGTCGCTGGACGCGTCAGTGGCTTCTGGGGGAGGCGGCGAGTGGGTGAGGAGGATCGAGATGCTGCTGCTGCGGCCGAAGATCTTCGCCGCGGTGGAAGGCGCACGGCGGAGGACTCCGCCGTGGAGGGAGGCGTTTTACGGCGCCGGAATGAGGCCGGTGCAGTTGAGCCAGTTCGCGGATTATCAGGCAGAGTGTTTGCTTGCCAAGGTGCAAATCAGAGGCTTCCACGTGGACAAACGACATGCTGAGCTGGTGCTCTGCTGGCACGAACGAGCCATGGTTTCCACGTCAGCATGGCGGTGTTAG 1572 0.5611 MRVPSSPQASNNHVLHTNNNPNTFTYEPTSVLDLCRSPSPEKKLTVPKPEPQHNNQLDLDDHVLPNSDWWESIMKDLTLPEDSPTPLLKTNPSCIPDFPPSSQDPSFDHPTPDFTSLSEIYNQNIPFNYPSNTLEPSFHDLNHSLHPHNNNWDFIEEFIRAADCYDSSHFQLAQAILERLNNRLLRSPMGKPLHRAAFHFKDALQSILSGSNRNGNGSNLLSSMAEIVQTIKTYKAFSGISPIPMFSIFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKAGPGTAPLLRITAVVPEEYAVESRLVRQNLNQFAQDLGISAQVDFVPLRTFETVSFKAVRFIDGEKIAVLLSPTIFSRLGGNGGSVGAFLADVRRMAPGVVVFVDGEGWTEAAAAASFRRGVVSSLEFYSMMLESLDASVASGGGGEWVRRIEMLLLRPKIFAAVEGARRRTPPWREAFYGAGMRPVQLSQFADYQAECLLAKVQIRGFHVDKRHAELVLCWHERAMVSTSAWRC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00533 523 MobiDBLite consensus disorder prediction 1 62 - -
Gma02g00533 523 ProSiteProfiles GRAS family profile. 145 522 IPR005202 -
Gma02g00533 523 PANTHER SCARECROW-LIKE PROTEIN 15 11 522 - -
Gma02g00533 523 MobiDBLite consensus disorder prediction 1 32 - -
Gma02g00533 523 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 522 IPR005202 -
Gma02g00533 523 MobiDBLite consensus disorder prediction 81 108 - -
Gma02g00533 523 Pfam GRAS domain family 156 522 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00533 Gma-Chr2 5297777 5299806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00533 57 522 GRAS Transcription Factor Family AT4G36710 53.926 3.61e-157 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma02g00533 GRAS 2.7e-82 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00533 - - gmx:100802883 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00533 02 5297777 5299806 Gma02g00533 02 5297777 5299806 ECH
Gma16g01293 16 31536381 31538343 Gma02g00533 02 5297777 5299806 GST
Gma01g01806 01 53671240 53673178 Gma02g00533 02 5297777 5299806 PCT
Gma11g00598 11 5008427 5009977 Gma02g00533 02 5297777 5299806 PCT
Gma02g00533 02 5297777 5299806 Gma01g01806 01 53671240 53673178 PCT
Gma02g00533 02 5297777 5299806 Gma11g00598 11 5008427 5009977 PCT