Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00530 ATGACGGTCGATTTGGACAACGCTTCCACCGCTTCAGGTGAAGCAGCCAGTGTCTCTTCCTCCGGCAATCAGACAAAACCCGCCGCTCCAAAGAAAAAACGAAACCTCCCGGGCATGCCAGATCCGGAGGCAGAGGTGATCGCTCTGTCGCCCAAGACTCTCTTAGCGACGAACcgtttcgtgtgcgagatatgcaacaaaggattccagagagaccagaatctgcagctccaccgccggggtcacaacctgccgtggaagctgcggcagaggTCTAGCAAGGAGGTCAGAAAGAGAGTGTACGTGTGCCCCGAGCCCACGTGCGTGCACCACGACCCTTCCAGAGCGTTGGGGGACTTGACGGGGATTAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGATAAGTGCTCCAAGAAGTACGCGGTTCAGTCCGATTGGAAGGCGCACTCTAAAGTCTGCGGCACAAGAGAGTATAAGTGCGACTGCGGAACCGTTTTCTCCAGGAGGGATAGCTTCATCACGCATAGGGCGTTTTGCGATGCTTTGGCGGAGGAGAACGCCAGATCTCACACTGTTGTAAAAGATATTTCGGAGAATGATTCCAAGGTTTTAATCGGTGATTcgccacccccgcagcctgttgcagccacggtggctgctactactgctgctgctaccaccaccaccactactactattacttctactacgcaggcaAATAGTGTTATGTCCTCTTGTTTGCAGACGCATAACCTAGATTTGCCAGAAAACAATCCCCCACAAGTCATTGAGGAGCCACAGGCTGCTACTGCTACTGCTATAAGTGGGAGCTGTGGCAGCAGCAGCTCCTGCTCAACTAGCAATGGTGGTGCTACTTGTAATAGTAACAGTAGTAGTAGTGTGTTTGCGAGTTTGTTTGCTTCTTCAACAGCATCTGTGACCCTACAATCTCAAACACCAGCATTCAGTGACTTGATTAGAGCCATGGGGCCTCCGGAACACCCTGCGGATCAAATCTCGGGTCCTTCATCCGAGGCGATCTCTCTTTGCCTCTCCACCACTAGTGCCTCACCAATCTTCGCAACAGGTGGCCGGCAGTATGCGTCGTCTTCACCGCACCCGGCCATGTCAGCCACTGCATTGCTGCAGAAGGCAGCACAAATGGGTGCTGCTGCCACAAACGCCTCCCTTCTTCGCGGGCTTGGCATTGTGTCATCGTCACCTTTGGATTCCACCTCGTCGGGACAGCAAAATGTCCTGCAATGGGGCCACCAACAGCAGTTGGAACCCGAGAGTGGCTCGGTCGCTGCAGCAGGGCTAGGACTTGGTCTTCCATGTGAAGATGGTGGTTCTGGACTAAAGGAATTGATGATGGGAACTTCCTCAATGTTTGGTCCTAAACACACCACTCTTGATTTTCTAGGATTGGGGATGGCTGCCGGTGGCACTGCTGGTGGAGGCTTATCTGCACTTATCACATCTATTGGGGGTGGTTTGGATGTAACTGCAGCCTTTGGCAATGGAGATTTTTCTGGCAAAGATATTGGAAGTAGCTCTTGA 1575 0.4559 MTVDLDNASTASGEAASVSSSGNQTKPAAPKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAEENARSHTVVKDISENDSKVLIGDSPPPQPVAATVAATTAAATTTTTTTITSTTQANSVMSSCLQTHNLDLPENNPPQVIEEPQAATATAISGSCGSSSSCSTSNGGATCNSNSSSSVFASLFASSTASVTLQSQTPAFSDLIRAMGPPEHPADQISGPSSEAISLCLSTTSASPIFATGGRQYASSSPHPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSPLDSTSSGQQNVLQWGHQQQLEPESGSVAAAGLGLGLPCEDGGSGLKELMMGTSSMFGPKHTTLDFLGLGMAAGGTAGGGLSALITSIGGGLDVTAAFGNGDFSGKDIGSSS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00530 524 Gene3D Classic Zinc Finger 40 106 - -
Gma02g00530 524 Gene3D Classic Zinc Finger 114 194 - -
Gma02g00530 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Gma02g00530 524 MobiDBLite consensus disorder prediction 1 43 - -
Gma02g00530 524 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Gma02g00530 524 MobiDBLite consensus disorder prediction 1 28 - -
Gma02g00530 524 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 522 - -
Gma02g00530 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 522 - -
Gma02g00530 524 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Gma02g00530 524 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Gma02g00530 524 SMART c2h2final6 101 131 IPR013087 -
Gma02g00530 524 SMART c2h2final6 136 156 IPR013087 -
Gma02g00530 524 SMART c2h2final6 60 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00530 Gma-Chr2 5263776 5266601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00530 1 524 IDZ Gene Family AT5G66730 56.827 7.61e-175 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma02g00530 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00530 K25869 - gmx:100818698 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00530 02 5263776 5266601 Gma02g00530 02 5263776 5266601 ECH
Gma02g00530 02 5263776 5266601 Gma16g01291 16 31491889 31496039 ECH
Gma16g01291 16 31491889 31496039 Gma02g00530 02 5263776 5266601 GST
Gma01g01800 01 53632694 53636387 Gma02g00530 02 5263776 5266601 PCT
Gma02g00530 02 5263776 5266601 Gma01g01800 01 53632694 53636387 PCT