Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00513 ATGATGCATCATTGTTGTGGAAGCTCACAGGGGCACGTGATGGGCACTTGCACATGCGGCATGTATCACAATCACAATAGCAGCGAAGCCAGCTCTTATGGGTCGATGCTGTTTTCTATGCCCAACAACAACGAATATTACCAAGAACACGACATCTATTCTTCCTTCACGCCCTCTCATTCCTCCGTCGACTGCACGCTCTCCCTCGGAACCCCCTCCACGCGTTTAACCCAAGACGAGGACGACAACAAACGACACCGTCACCAACGTCGTTCTGGTGTCACCAGTTTTTGCTGGGATCTGCTCCATTCCAATCACAACAACAACAACATCACGCAATCTCAAAGCAAGTCTAGCAGCAGAGGAAGCAACAACAACAACGACTCTCTCCTCGCTCGTCGTTGCGCTAACTGCGACACCACTTCCACTCCCCTCTGGAGGAACGGTCCTCGTGGCCCAAAGTCACTATGCAACGCTTGCGGGATCAGATTCAAGAAGGAACAGAGAAGAGCGAGCGCCGCGGGGGCCACGTCAGCGTCAGCGGCGGTTCCCGGCGGCGCAATGGAATCGGCGCGCGTGTACGGCCACCACCACAACAATTCATGGTACGCACACTCTCAGAGCCAGAAGGTGATGGGTAACGAGTTACGCTTCATGGATGATTCCGATGACAGAGACTCGGATAATAATGGCATTCCGTTCCTCTCTTGGAAACTCAACATTCCAGATCGAACGAGCCTGGTTGATGAACGATGGTGA 759 0.531 MMHHCCGSSQGHVMGTCTCGMYHNHNSSEASSYGSMLFSMPNNNEYYQEHDIYSSFTPSHSSVDCTLSLGTPSTRLTQDEDDNKRHRHQRRSGVTSFCWDLLHSNHNNNNITQSQSKSSSRGSNNNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEQRRASAAGATSASAAVPGGAMESARVYGHHHNNSWYAHSQSQKVMGNELRFMDDSDDRDSDNNGIPFLSWKLNIPDRTSLVDERW 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00513 252 Pfam GATA zinc finger 135 169 IPR000679 GO:0006355|GO:0043565
Gma02g00513 252 ProSiteProfiles GATA-type zinc finger domain profile. 129 165 IPR000679 GO:0006355|GO:0043565
Gma02g00513 252 PANTHER GATA TRANSCRIPTION FACTOR 18 1 249 IPR044272 GO:0003700|GO:0009908
Gma02g00513 252 CDD ZnF_GATA 134 166 IPR000679 GO:0006355|GO:0043565
Gma02g00513 252 ProSitePatterns GATA-type zinc finger domain. 135 160 IPR000679 GO:0006355|GO:0043565
Gma02g00513 252 PANTHER GATA TRANSCRIPTION FACTOR 18 1 249 - -
Gma02g00513 252 Gene3D - 131 184 IPR013088 GO:0006355|GO:0008270
Gma02g00513 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 170 - -
Gma02g00513 252 SMART GATA_3 129 184 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00513 Gma-Chr2 5123430 5124512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00513 18 248 C2C2-Gata Transcription Factor Family AT3G50870 43.262 2.50e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma02g00513 GATA 1.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00513 - - gmx:100799154 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00513 02 5123430 5124512 Gma02g00513 02 5123430 5124512 ECH
Gma16g01276 16 31258999 31260528 Gma02g00513 02 5123430 5124512 GST
Gma11g00631 11 5242701 5243587 Gma02g00513 02 5123430 5124512 PCT
Gma02g00513 02 5123430 5124512 Gma01g01655 01 52233720 52242691 PCT