Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00509 ATGGACATGAGAGAGCAAGATAAGGTTATAGAGATGCCTAGCACTTTGGGTTATAATAACTCCTCTTCTGGTTCCAAGCTATCATCACCAATAGGTGAAAGAAGTAGTGACCAATTACCTCCTCATCAATCTCACACATTAGTTTTCACTGATCCACCCCAAACTTCTTCACATCATCATAATCTCTATCCCCCTTCACTCCCACCAAACCCTCTTCAACTTCCACAACCTCATCACAGACCCAGAAGAGATCCAGATCCAAGTTCTATTATTTCTCCTCCTATCATAAGCACCACCCCAACAACAGCACCACCACAACCACACACAACAACAACATTATTCAGAtaccgagaatgtctgaagaatcatgctgcaagcatgggaggtcatgtcacagatgggtgtggagagttcatgccaaatggagaagagggcaccccagaatccttaaagtgtgcagcttgtgagtgccaccgcaatttccacagaaaagaacctcaTCAAGGAGTACTAGTAGAGTCACAACTACAACATGTTCTTCTCAACAAAAACAATAGGAACATAAACACTATTATTCATTCTCCAGACTCTCATCACCACCTTCAGTTTCCTACACCACACTCTCATCTTCATGGTGGGCCGCCTGTTGTTCAGCCCGTGATGTTGGGCTTTGGGGGATCAGGCCCAGCTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCAATGATCATGGAGGAGGAGGGAACAACTTGTTATTATCATCAGTGCAGCAGCAGCCACCACTACTCTCATCATCATCTTCAaagaagaggttcaggaccaagttcacacagcaacagaaagataggatgatggagtttgctgagaaacttgggtggaagatccagaaacaagatgaacaggaactgcatcagttttgctcccagGATAAATGGCAAAAGATAGAACATGGAATGGCAGCACCAGCGACGAGGCGAGGGATTCATGTTTCTACTTCCTTCACCCACAAAGACTTTCATACCAGATGGGCACAAGGCACAACAACGCCAGACACGACAGCAACGAGACCCACAAACACGTTCACACATGAATCAAAGCTAGCTGAGGTGGCAGTGGCCAAGCTCGCGTTTAACAGAGGGCCAAACAGGAGAATAGGGGTTCGTTGGAGAAATTAA 1179 0.3469 MDMREQDKVIEMPSTLGYNNSSSGSKLSSPIGERSSDQLPPHQSHTLVFTDPPQTSSHHHNLYPPSLPPNPLQLPQPHHRPRRDPDPSSIISPPIISTTPTTAPPQPHTTTTLFRYRECLKNHAASMGGHVTDGCGEFMPNGEEGTPESLKCAACECHRNFHRKEPHQGVLVESQLQHVLLNKNNRNINTIIHSPDSHHHLQFPTPHSHLHGGPPVVQPVMLGFGGSGPAESSSEDLNMFQTNDHGGGGNNLLLSSVQQQPPLLSSSSSKKRFRTKFTQQQKDRMMEFAEKLGWKIQKQDEQELHQFCSQDKWQKIEHGMAAPATRRGIHVSTSFTHKDFHTRWAQGTTTPDTTATRPTNTFTHESKLAEVAVAKLAFNRGPNRRIGVRWRN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00509 392 MobiDBLite consensus disorder prediction 13 63 - -
Gma02g00509 392 SUPERFAMILY Homeodomain-like 263 310 IPR009057 -
Gma02g00509 392 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 59 310 - -
Gma02g00509 392 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 116 165 IPR006456 -
Gma02g00509 392 Gene3D - 258 312 - -
Gma02g00509 392 MobiDBLite consensus disorder prediction 91 108 - -
Gma02g00509 392 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 115 165 IPR006456 -
Gma02g00509 392 MobiDBLite consensus disorder prediction 1 108 - -
Gma02g00509 392 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 59 310 - -
Gma02g00509 392 Pfam ZF-HD protein dimerisation region 114 166 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00509 Gma-Chr2 5067770 5073331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00509 86 315 ZF-HD Transcription Factor Family AT2G18350 43.966 1.02e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma02g00509 ZF-HD_dimer 2.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00509 - - gmx:100810719 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00509 02 5067770 5073331 Gma02g00509 02 5067770 5073331 ECH
Gma02g00509 02 5067770 5073331 Gma16g01270 16 31155442 31156395 ECH
Gma16g01270 16 31155442 31156395 Gma02g00509 02 5067770 5073331 GST
Gma01g01778 01 53404740 53405693 Gma02g00509 02 5067770 5073331 PCT
Gma11g00632 11 5258660 5260349 Gma02g00509 02 5067770 5073331 PCT
Gma02g00509 02 5067770 5073331 Gma01g01778 01 53404740 53405693 PCT
Gma02g00509 02 5067770 5073331 Gma11g00632 11 5258660 5260349 PCT