Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00504 ATGGGAACTGATGGCGGTGAACAGATAGAGACATTACCAAATCCTCGCTCCTTTAAGGTACATCGTACAATGTGCACAGAACTCAGGAAATTAGTTGATAGGATATTGCGGATTATTCCACAGATAGAAGCAGCACGCCCTTGTGGAATGCAGGCTCTGTGTTTGCTGAACAAGGCAATTGATAAAGCCAGACAACTGCTGCTATACTGCTCCGAAACTAGTAAACTTTACCTGGCAATAACAGGGGATTCCATACTCTCAAAATTCCAGAAGGCAAGAAAATCGTTAGCCAAAAGCTTAGTCCAGATTCTGAATATGGTTCCAGTTATGTTGGCTGCAGAGATTTCTCGACTAATTGGTGATCTTGAGTGTGTGACATTTGTCTTCGACTCTGCTGAAGAAGCAGCTGGGAAGGTTGTGAAACGATTGCTCCAGCAAGATCCTTCAACGTCAGATAAAGATTTAATGGAGGAATCTGAAATAAAAGATTTTCAGTTTGTAGCAGCAAGACTTGGTATTACATCCCCAACGGCCATCCTAATAGAGAAACGATCTATTAAGAAGTTGCTAGAAAAACTCAAACGAAATGACCAGACAAAAGAGATTGTCTTGAAAAATCTTTTGTTTCTCCTGATAAAGCACCGGAAATCAATCACAGGAGAACAAATGGAGGTCTATTCTCAAATTGAAGTACCAATTACAACTGAGAACTCAGGTCATGAGTCTCAAGAAAACCTTCATGTCAAGTCAGACCCATACTTGAGCCATGGTCAGTATAGAACTCATGCCGGTGATTTGAGCAGACTTACACCTCCTAAGGAATATACATGTCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAAAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATACTATATGCCCCAAAACTAAAAAGAAACTGGTTCATATGGCATTGACTCCAAACATTGCCTTAAAGGACTTAATATTAAAGTGGTGTGAAACTAATGGAGTCTCCATTCCTGACCCGAGTAGGCTAGTGCAAGATTGTCACTCATGGGAAGCTTCCTCCAACTCCATTAGGAGTTTTGGAAGTTCTTTGTATGATTTGAACTTCCCAACGGATTTTAGTAACATGTCTCTTGGATCATTAGATACCAATTATAATTCAGATTCCTCCCACACTAAGGCCAATCATAGCTTAAATTTGATGTTGAACAAGAGCAGTGACAATTCACACAGGCATCAATCTCGTGCACGGATACATGATGCTGATTGGATGCATTTGTCTAAACTCCATGAGCGTCAATGGGAATCTCAATGCCAAGTCATTGAAAATATAAAAATGGATTTCAAATGCAATTGCCAAGCTTTTTGCTGTGTGTCATCTGAGAATTTCATTGACCCACTCACGAGATTTCTGAGCACTGGGTGTGAGCGGCATGATGTAAAAGCTCTGAGAGCAGGAACTAAGTTGCTATTGGAATTTATGAAGTGTTGCAGAAATGGTATGACCAATTTAAGTGAAGATACGTGCATTATGTTGGAAAGTCTTCTTGATACAGAAGTGATTGGTGAAGCTCTCACCATAATGGAAGAACTGACAGGGAATTGGTATGAAAAAACTAACATTGCAGCTTCCAGTGTACTCTCTTCTGTTTCAAAGATCCTTGATTCAGGTAATGAAGAGTTCCGACGAAAAGCTATTAAAATAATGAATAATTTTTCATCCAATGGTCAAATTTGTCCCTACATGGTGTCTCTCGGGTGCATCCCAAAATTACTGCCATTTTTTGAAGACAGAACCCTTTTGAGAGACAGTATACATATTTTGAAAAACCTTTGTGATACTGAAGAGGGTAGGGTTACTGTTGTTGAAACAAAAGGATGCATATCTTCTGTTGTTGAAATACTTGAGACTGGCAGTGATGAGGAAAAAGAACCTGCGCTGGTTATTCTTCTCTCCTTATGCTCTCAACGTGTGGAATACTGTCAGTTGGTTATGTATGAGGGGATTATTCCTTCTCTTGTCAACATCTCCAACAAAGGAAGTGATATGGCAAAGGCTTATGCATTAGAACTACTCCGTCTTTTGAAGGGTGATAGCGAGTTTGAGTATGAAGATTGTTGTGAGCCAAATCTCAACGGCTCTCAAGAACCTAACAACAATCACTATCAAGAAAAGAAATCGTCAAAGAAACCGTCAATTTTGAAGAAACTGTCACTCTTCTCAAAATCCATTTCAGTTGCACCAAAAACCAAGAGATGA 2283 0.3955 MGTDGGEQIETLPNPRSFKVHRTMCTELRKLVDRILRIIPQIEAARPCGMQALCLLNKAIDKARQLLLYCSETSKLYLAITGDSILSKFQKARKSLAKSLVQILNMVPVMLAAEISRLIGDLECVTFVFDSAEEAAGKVVKRLLQQDPSTSDKDLMEESEIKDFQFVAARLGITSPTAILIEKRSIKKLLEKLKRNDQTKEIVLKNLLFLLIKHRKSITGEQMEVYSQIEVPITTENSGHESQENLHVKSDPYLSHGQYRTHAGDLSRLTPPKEYTCPISLRLMYDPVVIASGKTYERMWIQKWFDEGNTICPKTKKKLVHMALTPNIALKDLILKWCETNGVSIPDPSRLVQDCHSWEASSNSIRSFGSSLYDLNFPTDFSNMSLGSLDTNYNSDSSHTKANHSLNLMLNKSSDNSHRHQSRARIHDADWMHLSKLHERQWESQCQVIENIKMDFKCNCQAFCCVSSENFIDPLTRFLSTGCERHDVKALRAGTKLLLEFMKCCRNGMTNLSEDTCIMLESLLDTEVIGEALTIMEELTGNWYEKTNIAASSVLSSVSKILDSGNEEFRRKAIKIMNNFSSNGQICPYMVSLGCIPKLLPFFEDRTLLRDSIHILKNLCDTEEGRVTVVETKGCISSVVEILETGSDEEKEPALVILLSLCSQRVEYCQLVMYEGIIPSLVNISNKGSDMAKAYALELLRLLKGDSEFEYEDCCEPNLNGSQEPNNNHYQEKKSSKKPSILKKLSLFSKSISVAPKTKR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00504 760 MobiDBLite consensus disorder prediction 718 738 - -
Gma02g00504 760 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Gma02g00504 760 Gene3D - 606 712 IPR011989 -
Gma02g00504 760 CDD RING-Ubox_PUB 277 317 IPR045210 -
Gma02g00504 760 Gene3D - 406 605 IPR011989 -
Gma02g00504 760 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Gma02g00504 760 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Gma02g00504 760 PANTHER U BOX DOMAIN-CONTAINING 2 753 - -
Gma02g00504 760 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 753 - -
Gma02g00504 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Gma02g00504 760 SUPERFAMILY RING/U-box 266 348 - -
Gma02g00504 760 SUPERFAMILY ARM repeat 437 708 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00504 Gma-Chr2 5035327 5039402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00504 15 713 U-box Gene Family AT4G36550 37.902 8.43e-139 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00504 - - gmx:100797572 1494.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00504 02 5035327 5039402 Gma02g00504 02 5035327 5039402 ECH
Gma02g00504 02 5035327 5039402 Gma16g01266 16 31100803 31106363 ECH
Gma16g01266 16 31100803 31106363 Gma02g00504 02 5035327 5039402 GST
Gma01g01774 01 53362807 53368517 Gma02g00504 02 5035327 5039402 PCT
Gma11g00636 11 5294757 5300231 Gma02g00504 02 5035327 5039402 PCT
Gma02g00504 02 5035327 5039402 Gma01g01774 01 53362807 53368517 PCT
Gma02g00504 02 5035327 5039402 Gma11g00636 11 5294757 5300231 PCT