Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00486 ATGTTTTCCTCAAGAGACATGGCTATGGCTTCACCCTCTTCAATCTTCTCAGCTTATGCTTCCATGACAGCCTACATTATGCTCCTGCGTTCAATTACCAACGACCTCATTCCTCAACCAATTCGCTGCTACCTCACCAACACCTTCCGCTACTTCTTCAAGGCTCGCTGCAACGCCCTCGCCCTCATCATCGAAGAGTACTCCAGTGGCATAGCGCGCAACCATGTCTACGACGCTGCAGAGGTTTACTTGTCCACCAAAATCACCCCAGAAAATGAGAGGCTCAACATCAGCAAGAGTCCAAAGGAGAAAAAACTCTCCATTAGGCTGGAAAAGGGTGAAGAGCTAGTTGATTGGTTCAACGGGGTTAAGCTCAACTGGAAACTAATCTGCTCAGAGTCTGAGAAGAGCAATAGTCCCACAAGAGCAGAAAAGAAGTACTTTGAGCTAAGCTTTGAGAAGAAGCACAAGGAGATGGTGTTGGGAACTTACTTGCCTTTCATTCTTGAGAAGGAAAAGGAGATGAAGGACGAGGAGAGGGTgttgaagatgcacactctcaacacttcatatggttatggagggttcaagtgggattctattaatttagaccacccttcaacgtttgagacgctggctttggaggcagagcagaagagtgccatcatggaggatttgagcaggtttgtgaggaggaggaagtattataggaaagttgggagggcttggaaacgcgggtacttgttgtacggccctccaggtaccggcaaatcgagcttgatcgcagccatggctaactacttgaagtttgatatctatgatcttcagcttgacaacttagtgaccgattccgacctcagaaagttgttgctagcaactgaaaacaggtctattctggtgattgaggacatcgattgcagtactgtcgatctGCCAGGGCCTAGGCATGGAGATGGACGTAAGCAACCTGATGTGCAGTTGAGTTTGTGTggattactcaacttcatagatgggttatggtcgagttgtggagacgagagaatcatcatactcaccaccaaccacaaggaaaggctagacccggcactgctgcggccaggaagaatggacatgcacattcacatgtcctactgctcctaccacggcttcaaggttttggcctcaaactacctagacatcgCCCCAGATCATCACCTCTTCGGGAAGATTGAAGGGCTGATAGAGGACATGGAGATAACCCCAGCACAAGTGGCAGAGGAACTGATGAAGAGCGAAGATGCTGACACGGCGCTAGAAGGGTTCCTAAAGCTGCTTAAGAGGAAGAAGATGGAAGGTGATGTGTGTGAGAATGATGGTTCACATAAAACAGAACTTCGCCAATCTAAAAGGTCCAAAGTTGGTTGCAAGCAGAAAAGACCCGTTTGTATCAGCAAGAGAAAAAATGGTGTGGGTACTCAAAGAATGACAAGAGAGGACGTACATTGTAATCAGCTTAGCACCTTTGGAACGATCTAA 1515 0.2898 MFSSRDMAMASPSSIFSAYASMTAYIMLLRSITNDLIPQPIRCYLTNTFRYFFKARCNALALIIEEYSSGIARNHVYDAAEVYLSTKITPENERLNISKSPKEKKLSIRLEKGEELVDWFNGVKLNWKLICSESEKSNSPTRAEKKYFELSFEKKHKEMVLGTYLPFILEKEKEMKDEERVLKMHTLNTSYGYGGFKWDSINLDHPSTFETLALEAEQKSAIMEDLSRFVRRRKYYRKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLQLDNLVTDSDLRKLLLATENRSILVIEDIDCSTVDLPGPRHGDGRKQPDVQLSLCGLLNFIDGLWSSCGDERIIILTTNHKERLDPALLRPGRMDMHIHMSYCSYHGFKVLASNYLDIAPDHHLFGKIEGLIEDMEITPAQVAEELMKSEDADTALEGFLKLLKRKKMEGDVCENDGSHKTELRQSKRSKVGCKQKRPVCISKRKNGVGTQRMTREDVHCNQLSTFGTI 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00486 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 427 IPR027417 -
Gma02g00486 504 Pfam ATPase family associated with various cellular activities (AAA) 248 376 IPR003959 GO:0005524|GO:0016887
Gma02g00486 504 CDD AAA 223 377 - -
Gma02g00486 504 Gene3D - 197 373 IPR027417 -
Gma02g00486 504 SMART AAA_5 243 379 IPR003593 -
Gma02g00486 504 Gene3D - 374 445 - -
Gma02g00486 504 ProSitePatterns AAA-protein family signature. 347 365 IPR003960 GO:0005524|GO:0016887
Gma02g00486 504 PANTHER BCS1 AAA-TYPE ATPASE 8 457 - -
Gma02g00486 504 Pfam Domain associated at C-terminal with AAA 37 130 IPR025753 -
Gma02g00486 504 PANTHER BNAA10G17020D PROTEIN 8 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00486 Gma-Chr2 4910795 4913112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00486 221 379 Calmodulin-binding Proteins AT3G56690 26.347 5.40e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00486 - - gmx:100812263 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00486 02 4910795 4913112 Gma02g00486 02 4910795 4913112 ECH
Gma16g01248 16 30580738 30583417 Gma02g00486 02 4910795 4913112 GST