Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00478 ATGTCAACGGAAGCGCCCAAGCGCGACCAATGGCAGTGGGAGAACGCCACCGCCGGCGCCGCCGCTGGATTCGCCACCGTCGCCGTCATGCATCCCCTCGATGTTGTCCGAACTAGGTTCCAAGTTAACGATGGTCGAGTCTCTAATTTTCCCAGTTACAAGAACACCGCTCACGCCGTTTTCACTATCGCTCGTTCCGAGGGATTAAGAGGGTTATATGCAGGCTTCCTTCCTGGGGTTCTTGGGTCAACTATTTCATGGAGTTTATATTTCTTCTTCTATGACAGAGCCAAACAGAGATATGCAAGGAACAGGGAGGGGAAGTTGAGCCCAGGTCTGCATCTTGCCTCAGCAGCTGAAGCAGGAGCTATAGTTTCCTTCTTCACAAATCCAGTATGGCTGGTAAAGACAAGATTGCAGCTTCAAACTCCTCTTCATCAGACACGACCATACTCTGGGGTTTATGATGCATTTAGGACCATAATGAGGGAAGAAGGATTTAGTGCACTTTACAGAGGAATTGTTCCTGGTCTATTTCTGCAGGTCTCTCATGGTGCTATTCAGTTTACAGCATATGAGGAGCTACGCAAAGTTATTGTTGATTTTAAGAGTAAGGGAAGTACAGTAGATAATCAAAACCCTGATAAATTGCTGAATTCTGTTGATTATGCTGTTCTTGGAGCAACATCAAAACTTGCTGCAGTACTTCTAACCTATCCATTTCAGGTTATACGGGCTCGATTGCAGCAAAGACCCAGTGGTGATGGGGTTCCAAGATATATGGACACTTTGCATGTTGTGAAAGAAACTGCACGATTTGAAAGTGTCCGAGGTTTTTACAAAGGAATTACCGCAAACCTCTTGAAGAATGCTCCCGCTTCTTCGATAACATTTATTGTTTATGAAAATGTCCTAAAATTGCTTAAACCGGCTAGAAGGAATGACTGA 948 0.4515 MSTEAPKRDQWQWENATAGAAAGFATVAVMHPLDVVRTRFQVNDGRVSNFPSYKNTAHAVFTIARSEGLRGLYAGFLPGVLGSTISWSLYFFFYDRAKQRYARNREGKLSPGLHLASAAEAGAIVSFFTNPVWLVKTRLQLQTPLHQTRPYSGVYDAFRTIMREEGFSALYRGIVPGLFLQVSHGAIQFTAYEELRKVIVDFKSKGSTVDNQNPDKLLNSVDYAVLGATSKLAAVLLTYPFQVIRARLQQRPSGDGVPRYMDTLHVVKETARFESVRGFYKGITANLLKNAPASSITFIVYENVLKLLKPARRND 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00478 315 Gene3D Mitochondrial carrier domain 104 314 IPR023395 -
Gma02g00478 315 Pfam Mitochondrial carrier protein 109 200 IPR018108 -
Gma02g00478 315 Pfam Mitochondrial carrier protein 221 309 IPR018108 -
Gma02g00478 315 Pfam Mitochondrial carrier protein 11 103 IPR018108 -
Gma02g00478 315 SUPERFAMILY Mitochondrial carrier 12 303 IPR023395 -
Gma02g00478 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Gma02g00478 315 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 309 IPR044712 GO:0006862|GO:0055085
Gma02g00478 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 218 307 IPR018108 -
Gma02g00478 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 198 IPR018108 -
Gma02g00478 315 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Gma02g00478 315 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085
Gma02g00478 315 PRINTS Mitochondrial carrier protein signature 171 189 IPR002067 GO:0055085
Gma02g00478 315 PRINTS Mitochondrial carrier protein signature 227 249 IPR002067 GO:0055085
Gma02g00478 315 PANTHER BNAA09G07970D PROTEIN 10 309 - -
Gma02g00478 315 Gene3D Mitochondrial carrier domain 1 103 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00478 Gma-Chr2 4830931 4841354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00478 32 308 Chloroplast and Mitochondria Gene Families AT2G47490 38.351 1.61e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00478 K15115 - gmx:100790192 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00478 02 4830931 4841354 Gma02g00478 02 4830931 4841354 ECH
Gma16g01239 16 30476314 30481786 Gma02g00478 02 4830931 4841354 GST