Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00454 ATGAGAACTCGAAACGCCGATTCCGCCTCCAAATCCGCAACCCCTAAGAAGACGCCGCCGAAGAAATCCCCTGCGGCCAAGCGCACCACCGCCACCAAAACCAGAGCCACCAAGAAGAACGAGCTCTCGCCCGCACCCGATTCCAACCCCGATCAATCTCCTCTGGAACAGAAATCGTTAGGCAGTGCTAGCAGCGCAAAATCTGTGAAAAAGAAGACTCCGGGGAGATCGAGAAGTAAAGCAATCAATACTCCGAATTCGGAAGAACAATGTGAGGCAGTAGCTGATGAAACTCCAATTGAAGATGATACCGAGGTAGCAGAGAAAGTGGAAGATGTTGGAGTGGTTGATGCAGATAATGTTGAGGGTGAGAAGGAGGGGGGAAAAGGTGTTGGTTCTGTTGGATTGTCTGATGAGACGGATCGTAAGTCGATGGAAGTGGATGAACTTGTTCAAAAGGTTTGTGAATCTGTGGGAAAGGAAAATGATGTAATGGAAGTTGAAGTAGCTGCTTGCTGGGATGCTTCTGTTTCTTTTAGGCGACCAGGGCGACCTATTGTGGATCTCAATATATCTGCGGATAATGAAGATTGTACTGGTGAAAaggagggagagaaatggaaggaagagttgaaagatcaagagggggacaaagggaaggaagagttgaaaaaacaggaaggagacaacgggaaggaagagttgaaagaactggaaggagagaaaggaaaggaagagttgaaagaactggaaggagaaaaaggtgaggaagagttgacagaactggaaggagagaaaggaaatgttgaattgaaagaacagaaaggagacaaaggaaaggaaaagttgaaagagcaggaGCCAGAGAAAGCAAAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACTCTGAGTCTTTTGGTGTAGAAGGTGAAGCCCAGATGCAAAAAGAAGATGCTAATCCTATTAAAGATGGCGGTGAAGGACCAAAGATTGGTGAAAATTCAGATCTTGGAGAACAAGGGAAGGTGGAGCTTGTTGAAGATCCAGAAGAAAACCCTGAAGAAGATCCAGAGGAACCTCCAGAAGAAACTTCGGCATTGGAGGAGGAGCATAGGGAATTGGAGGCTATTGCAAATCAGCGAAAGATTAAAAAAGAACACGAGATTTTTGTTGGTGGATTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATCGGGGAGATAGTTGAAGTCAGATTGCATAAGAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTTCTGATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGCAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACCAAAGAAGCTATTAAACAGAAGCTGAAGGATTATGGTATTGAAGGGGTTGAAAACATTACGCTTGTCCCAGATGTTCAGCATGAGGGCTTGAGCTGGGGCTTTGCATTCCTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCCGATGTTATGTTTGGCCATGCTGAGCGAACAGCTAAGGTAGCCTTTGCTGAACCCATACGTGAACCAGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACATTGGGACGAAGATCATGTGAGGGAGCTGTTTAAATCTTATGGTGAAGTTGTAAGAATTGTGCTAGCACGGAATATGTCTTCAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGCGTAAATAAATCAGAATTGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAATCCTCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCAAATAAGTCATGCTAGGAGTGGAGCCTTTTCAAGACCAGGAAGGGGGTTTGGGCGGGGAAGACAGCCCTTCAACAACAGGGGGAATTTCAACTGGAGCAGGAGTTTCTATCGTGGTGGGCACAGCCAAATTGGAAGAATGGGTTTTCAGGATGACCATGATTTTAGTATGCATCCAGATTTCCGTCAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCAGGTAGCCGAGGTGCTGCATTTGCTGGACCATCTAGACCTTATCATGATAGAGCATGGTATGGTATTCCCGATGGAGGCCCTATTGAGCCTATTCCTCCAAGGAGGCCCTACTCCCCAGGTGGACAGTTTGACATGCCTTCTATGGGAAGGCATTTTGATGATCCATATCTGTATGATGACAATATGCATGGAATGAAACGTCCATTTTATATGACTGACCCTGAGCCTGATTACATGGGGCCTAATAGATTACGTCCTCGATTGGATTATGCAGATCCACCTATATTTCATGGAACTCATCACCATGATTCTTTTGGGGCTGGCAGCAGACAGTACCCTCCTGACTATTACGGTTCTGATTATGGTAGAGGTTCATATTTATCTTATTATGGGGGTGATGGCTCACATGGGCATGGATACTATTATTAG 2655 0.4064 MRTRNADSASKSATPKKTPPKKSPAAKRTTATKTRATKKNELSPAPDSNPDQSPLEQKSLGSASSAKSVKKKTPGRSRSKAINTPNSEEQCEAVADETPIEDDTEVAEKVEDVGVVDADNVEGEKEGGKGVGSVGLSDETDRKSMEVDELVQKVCESVGKENDVMEVEVAACWDASVSFRRPGRPIVDLNISADNEDCTGEKEGEKWKEELKDQEGDKGKEELKKQEGDNGKEELKELEGEKGKEELKELEGEKGEEELTELEGEKGNVELKEQKGDKGKEKLKEQEPEKAKGEETNLFGHEENSESFGVEGEAQMQKEDANPIKDGGEGPKIGENSDLGEQGKVELVEDPEENPEEDPEEPPEETSALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFSDKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENITLVPDVQHEGLSWGFAFLEFSCHADAMLAYKRLQKPDVMFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEVVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMCGGFQISHARSGAFSRPGRGFGRGRQPFNNRGNFNWSRSFYRGGHSQIGRMGFQDDHDFSMHPDFRQRQFGPQGAVRGGHYAGSRGAAFAGPSRPYHDRAWYGIPDGGPIEPIPPRRPYSPGGQFDMPSMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTHHHDSFGAGSRQYPPDYYGSDYGRGSYLSYYGGDGSHGHGYYY 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00454 884 MobiDBLite consensus disorder prediction 195 301 - -
Gma02g00454 884 SMART rrm1_1 390 463 IPR000504 GO:0003723
Gma02g00454 884 SMART rrm1_1 568 643 IPR000504 GO:0003723
Gma02g00454 884 SMART rrm1_1 470 550 IPR000504 GO:0003723
Gma02g00454 884 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 554 IPR000504 GO:0003723
Gma02g00454 884 MobiDBLite consensus disorder prediction 195 372 - -
Gma02g00454 884 CDD RRM_SF 569 643 - -
Gma02g00454 884 Gene3D - 337 463 IPR012677 -
Gma02g00454 884 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 567 647 IPR000504 GO:0003723
Gma02g00454 884 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 391 459 IPR000504 GO:0003723
Gma02g00454 884 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 569 635 IPR000504 GO:0003723
Gma02g00454 884 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 535 IPR000504 GO:0003723
Gma02g00454 884 MobiDBLite consensus disorder prediction 109 126 - -
Gma02g00454 884 MobiDBLite consensus disorder prediction 350 366 - -
Gma02g00454 884 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 389 467 IPR000504 GO:0003723
Gma02g00454 884 SUPERFAMILY RNA-binding domain, RBD 390 534 IPR035979 GO:0003676
Gma02g00454 884 MobiDBLite consensus disorder prediction 1 146 - -
Gma02g00454 884 SUPERFAMILY RNA-binding domain, RBD 559 663 IPR035979 GO:0003676
Gma02g00454 884 MobiDBLite consensus disorder prediction 25 70 - -
Gma02g00454 884 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 268 877 - -
Gma02g00454 884 Gene3D - 556 710 IPR012677 -
Gma02g00454 884 MobiDBLite consensus disorder prediction 94 108 - -
Gma02g00454 884 PANTHER NUCLEOLIN-LIKE ISOFORM X1 268 877 - -
Gma02g00454 884 CDD RRM_SF 471 534 - -
Gma02g00454 884 CDD RRM_SF 391 459 - -
Gma02g00454 884 Gene3D - 468 553 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00454 Gma-Chr2 4567902 4574462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00454 391 635 Eukaryotic Initiation Factors Gene Family AT2G23350 23.016 1.33e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00454 - - gmx:100784338 1479.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00454 02 4567902 4574462 Gma02g00454 02 4567902 4574462 ECH
Gma16g01215 16 29868627 29875976 Gma02g00454 02 4567902 4574462 GST