Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00452 ATGAAGCGAGCGAGGAAATCCAACAGGGTTTCGTGGGCTACTGGAGATAATCTGTGTCAGGTAAAATTGTTCTTGTCTGAGGATTTTCCCTCAATAGTTGGTCAGAAATCGCAAGATCATCTTCAAGCAAAGACATCATCAATGTTACATTCTAGTATTAACGAACCTAATGATTTGCCCCCCGGGTTTGAAAGCAGTCATTTCCTAAACCAACCAAAGGTTGAATTCTCCAACATTCCCCAGATAAAATGGGAATGCCCTCCGGTGGTTGTTGTCAGATCTCAATGGCGTGTTGCAGCAGGTGAAGAAAGTAGGGAGAAAGAGAATCAGAAACTGAGAGAAATGAGGGTGCTTGAAGCACTTTATCCCCGTCTTTCTGCCATTCCTCCTAGCCCTTCTGTCTCTTTGGATGTAGAAGAGGAAGATTATGATGATGGCAGAACTCCTCTCATCCCTATCATTCCCATTGAAGAGGAAGAATCTACGGATATTCTGCCTGAATTGGCAGTAGCACTGAAGCCTTCCCCCAATGTGCAGTCGCAGAACTCTCAGCAATATATATCAGCGAAAACTTCCATTAGTTCAGCCTCTAATGCTGCACATGCCGTTTCCTTGGATCCTTGTATAAGGCCCATGGCTGGGGTATCTTCTGGTATGGAAGCTGATTTAGCAGCAGCCTCTTCAGTTGTTGCAACCATTATAAGGAGTAATGAGCAAGGAACCCTGATTGATATGGATTTACTGGGTAAAATATTTACTGATCCAAAAATACTTGAGCAGTTGATTAATGAACATGGAACTGCAGCTACCACAGCAAGTGCTTCCTCAAATACTGTGGATATACCCACTTCTGGGTTGAAGCCTGCTATTCCATCAGTTCTGGTGTCTACACCTACACCTGATGTGACAGCTTCATGGACTACACCCACAAGTGCAGTGGGTTCATTACCTTCTGGGTTTGGGTTGAAGCCTTCAAATCCATCAGTTTCTTTATTGAATCCTACACCCACTCTGTCAGTGCCTGCAATTCCATCAGTTTCACTATTGTCTTCTTCACATGATAAGCCAGTGACTGCATCGGTTCCATTGTCCAGGCCCGTTCCTGGTATGCCAGTAACTCCCTCAGTTTCAATGCTTACTCATCATACACCTGCACCTGATATGCACAGGCCCGTCAGCAAAAATTTTCACCATGTGTCGAGTGGAATGCCCCCTGCTTTAAATAACCAGTCTCAGCAAGAGACAGCTATGGCATCCGGGCCAAAGCGAGCCAACTACTATAAAAACCTCATCAGGCAACATGGTGCAGACAAGCAAGACATCCAGGACTCGCACATAGGTATCCGTCATAGTAACTTCCAAGATATGAAACCGGTACATAACATTAAACAAAGAGAAGTGAAACCCAAAATCCTGAAACCATGCATATATTTTAAAAGCCCAAGGGGGTGCCGAAATGGTTCCAATTGCTCCTACCAGCATGATGTTTCAGCTCAGGAGGGAGCTGGTAACGTCTTAAGGGCACAGAGTGCAAAAAGATTGAAATTGGGAGGGGAGAACTAA 1563 0.4472 MKRARKSNRVSWATGDNLCQVKLFLSEDFPSIVGQKSQDHLQAKTSSMLHSSINEPNDLPPGFESSHFLNQPKVEFSNIPQIKWECPPVVVVRSQWRVAAGEESREKENQKLREMRVLEALYPRLSAIPPSPSVSLDVEEEDYDDGRTPLIPIIPIEEEESTDILPELAVALKPSPNVQSQNSQQYISAKTSISSASNAAHAVSLDPCIRPMAGVSSGMEADLAAASSVVATIIRSNEQGTLIDMDLLGKIFTDPKILEQLINEHGTAATTASASSNTVDIPTSGLKPAIPSVLVSTPTPDVTASWTTPTSAVGSLPSGFGLKPSNPSVSLLNPTPTLSVPAIPSVSLLSSSHDKPVTASVPLSRPVPGMPVTPSVSMLTHHTPAPDMHRPVSKNFHHVSSGMPPALNNQSQQETAMASGPKRANYYKNLIRQHGADKQDIQDSHIGIRHSNFQDMKPVHNIKQREVKPKILKPCIYFKSPRGCRNGSNCSYQHDVSAQEGAGNVLRAQSAKRLKLGGEN 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00452 520 ProSiteProfiles Zinc finger C3H1-type profile. 469 497 IPR000571 GO:0046872
Gma02g00452 520 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 516 - -
Gma02g00452 520 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00452 Gma-Chr2 4546305 4553422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00452 81 152 Homeobox Transcription Factor Family AT4G02560 44.444 5.09e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma02g00452 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00452 - - gmx:100783272 1011.91