Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00401 ATGGCTGATTCTCCCCTCGCAAGGAACTCAAGGTCACCTTCCCCATGGAAAGCTCAGTCGAGAtcgagatctaggtcaaggtcgagatctaggtcgaggtcTAGGCCTAGACAAAGGCCAAGATCGCGTTCTAGAAGTCGTGGCAGgtcaaggtcaccaattcgtggaaggtcaaggtcaccaattcatggaagGTCTGAACCTACAAATCCTGGTGACACACTTTATGTAACTGGTCTATCTTCGAGGGTCACCGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAAGATGCGGAGCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTTGAGCGGTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACAAGGGAGTATGGCTATCGTGGTGACCGAGGTGGTGACCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATTACTCACGTCGTAGGTCTCCGAGGCGTTCACCATACAGAGGTGGCCAAGATTATTCTCCCCAGCGCTCACCCTATGGTGGAAGGTCTAGGAGGGAAAGGTCTAGGTCACTTCCTTATTCTCCACATGGTAGCCCAGACAGGAAGTATGCTCGCGGATCTAGGTGA 741 0.444 MADSPLARNSRSPSPWKAQSRSRSRSRSRSRSRSRPRQRPRSRSRSRGRSRSPIRGRSRSPIHGRSEPTNPGDTLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAERCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTREYGYRGDRGGDRGRYRDGPDRDNYSRRRSPRRSPYRGGQDYSPQRSPYGGRSRRERSRSLPYSPHGSPDRKYARGSR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00401 246 Gene3D - 9 157 IPR012677 -
Gma02g00401 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Gma02g00401 246 PANTHER RNA RECOGNITION MOTIF 2 242 - -
Gma02g00401 246 SUPERFAMILY RNA-binding domain, RBD 66 181 IPR035979 GO:0003676
Gma02g00401 246 CDD RRM_RBMX_like 72 151 - -
Gma02g00401 246 SMART rrm1_1 74 147 IPR000504 GO:0003723
Gma02g00401 246 MobiDBLite consensus disorder prediction 170 198 - -
Gma02g00401 246 MobiDBLite consensus disorder prediction 1 21 - -
Gma02g00401 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Gma02g00401 246 MobiDBLite consensus disorder prediction 149 246 - -
Gma02g00401 246 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 242 - -
Gma02g00401 246 MobiDBLite consensus disorder prediction 1 76 - -
Gma02g00401 246 MobiDBLite consensus disorder prediction 22 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00401 Gma-Chr2 4127989 4131128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00401 72 155 Eukaryotic Initiation Factors Gene Family AT1G49760 34.524 1.67e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00401 K12897 - gmx:100800398 370.548