Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00380 ATGGGAGGTGACAGTGCCGTTGAGGAATCCGAAGGGGTCAACGTCAACATCAACGTTCGCTGCTCCAACGGTTCCAAGTTTTCCGTTCAGATTGCCGTCGATTCCACCGTCAGTTCCTTCAAAGATGCCGCCGCTTGCAGCTGCGACATCCCTGCCGAGCAACAACGCCTCATATACAAGGGTCGCATCTTGAAGGATGATCAAACCCTCCGAAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTCTGCTCTTGCCAATCCAACTGGTGGGACTAATACTAGTAGCACCGATACCAATACCAATACCAATATCCCAACAGATAATGCTAGAGTTGCTGGTGCGAATGAAGGTGAGGGTTTGGGAGGGCTTGGTTTTGGAGCTTCACTATTCCCTGGACTAGGTGTCAATGGGACTGGGGGCAATGGTTTATTTGGCGAGGGATTTCCTGATCTTGAACAGATGCAGCAACCATTTATTTCAAATCCCAATTTAGTGAGAGAAATAATGAATTCACCCACCATGCAGAATCTAATAAATAATCCTGAAATAGTGCGGAATCTTATAATGAATAATCCGCAAATGCAAGAGCTCATGGATCGAAACCCGGAGCTAGCACACATACTTAATGATCCCAGCACTCTTCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGGAAATAATAATGCAGCAGTTTCAGGGACTCATGGTGGCCATGCAAGGGACCCCTCAACTAATCCCTCCACCACTAGTTCTGAAGCAACTGCTGGTTCTCCTTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAACCGGAGGGGCTCAAAATAACAGCAGAAGGTCGTTGACTACTGGTGTGGATGCCAGACAGCAAGGACCTACTGGCTTAGGAGGGCATGGTCTGCCAGACCTTGAAAGCATGCTGGGTGGTAGTGCTATGCCAGATCCTGCTTTATTGACCCAGCTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAGATTCTTGGTGCTAATACTGAGCAGCGTGGCATGCCTGATTTAAATTCTCTTAGAGAAGTAATGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACATTGCAGCAACTCTTGTCTTTCCAGCAAACTCTTATGTCTCAGCTTGGCCAGCAACAATCAACATGGGAATCTGGTCAAACTGGCGGAGGCACTGGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCGGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGATTCACAAGAGAACATTAGAGCCCTTATTGCCACTTCAGGTAATGTTCATGCCGCAGTTGAACGGCTATTGGGGAACTCTGGTCAGTAG 1638 0.467 MGGDSAVEESEGVNVNINVRCSNGSKFSVQIAVDSTVSSFKDAAACSCDIPAEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGSALANPTGGTNTSSTDTNTNTNIPTDNARVAGANEGEGLGGLGFGASLFPGLGVNGTGGNGLFGEGFPDLEQMQQPFISNPNLVREIMNSPTMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAVSGTHGGHARDPSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNSRRSLTTGVDARQQGPTGLGGHGLPDLESMLGGSAMPDPALLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQTLMSQLGQQQSTWESGQTGGGTGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDSQENIRALIATSGNVHAAVERLLGNSGQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00380 545 Gene3D - 191 249 - -
Gma02g00380 545 PANTHER UBIQUILIN 9 545 - -
Gma02g00380 545 SUPERFAMILY Ubiquitin-like 13 100 IPR029071 -
Gma02g00380 545 SMART uba_6 503 541 IPR015940 -
Gma02g00380 545 Pfam UBA/TS-N domain 503 539 IPR015940 -
Gma02g00380 545 Gene3D - 4 96 - -
Gma02g00380 545 MobiDBLite consensus disorder prediction 90 110 - -
Gma02g00380 545 CDD Ubl_Dsk2p_like 15 87 - -
Gma02g00380 545 SMART ubq_7 15 86 IPR000626 GO:0005515
Gma02g00380 545 Gene3D - 485 545 - -
Gma02g00380 545 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 497 542 IPR015940 -
Gma02g00380 545 MobiDBLite consensus disorder prediction 271 346 - -
Gma02g00380 545 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 9 545 - -
Gma02g00380 545 MobiDBLite consensus disorder prediction 86 110 - -
Gma02g00380 545 MobiDBLite consensus disorder prediction 271 365 - -
Gma02g00380 545 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
Gma02g00380 545 SMART CBM 142 183 IPR006636 -
Gma02g00380 545 SMART CBM 196 235 IPR006636 -
Gma02g00380 545 SMART CBM 348 401 IPR006636 -
Gma02g00380 545 SMART CBM 404 439 IPR006636 -
Gma02g00380 545 CDD UBA_PLICs 503 541 - -
Gma02g00380 545 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Gma02g00380 545 SUPERFAMILY UBA-like 499 541 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00380 Gma-Chr2 3970822 3977430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00380 15 88 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 32.468 7.57e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00380 K04523 - gmx:100806776 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00380 02 3970822 3977430 Gma02g00380 02 3970822 3977430 ECH
Gma16g01107 16 27878994 27893676 Gma02g00380 02 3970822 3977430 GST
Gma01g01634 01 52048795 52054721 Gma02g00380 02 3970822 3977430 PCT
Gma11g00774 11 6467128 6472259 Gma02g00380 02 3970822 3977430 PCT
Gma02g00380 02 3970822 3977430 Gma01g01634 01 52048795 52054721 PCT
Gma02g00380 02 3970822 3977430 Gma11g00774 11 6467128 6472259 PCT