Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00330 ATGGATGGAATGTACGGAGTGCCGGCGGAGTACGCCGACAAGGCTCTCATGACGCCGGAGAATCTGATTTTCCCGCCGGACTACCACCACGACTTCCTCGCCGCCGGCCGGATTCCGCTGTTCGGATCCGACGAGTTCTTCTCCTCCTCCGCCGGAATTCACCGGCAGCAGGAAGATGACGTGGCAGCCACCACTGTCATGAAGGCCAAAATCGCCTCTCACCCTCACTACCCTCGCCTCCTCCAAGCTTACATCGAGTGTCAGAAGGTTGGGGCGCCTCCGGAAATCGCGCGCTTGTTGGAGGAAATCCGGCGAGAAAATGACCCGTGCAAGAGCGACGCCGTTTCTTCTTCCACGTGCtttggagccgatcccgagcttgacgaattcatggaAGCCTACTGCGACATGTTGGTGAAGTATAAATCCGACTTGGCTCGCCCTTTTGATGAAGCAACCACTTTCCTCAACAAGATCGAAATGCAGCTCAGCCATCTCTGCACTGGTGCTTCCGTTTCCAACGTTTCTGATGATGGGGGTGTGTCTTCGGACGAAGATTTGAGTACCGGAGATGGTGATGCTCAAGATGGCCAATTAAAGGGTGAAGATCGTGAGCTCAAGGATAGGCTTTTACGAAAGTTTGGGAGTCACATCGGTACTTTGAAACTCGAGTTTTCAAAGAAGAAAAAGAAGGGTAAGCTTCCAAAGGAAGCAAGACAAGCATTGCTTCAATGGTGGAATGTTCACTACAAATGGCCTTACCCTACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTGGACCAGAAGCAAATTAACAATTGGTTTATTAACCAAAGAAAACGTCATTGGAAACCATCAGAGAATATGCAGTTTTCTATGATGGAAAATTTTAACGGACGGATCCTTGCTGATGAATGA 927 0.4811 MDGMYGVPAEYADKALMTPENLIFPPDYHHDFLAAGRIPLFGSDEFFSSSAGIHRQQEDDVAATTVMKAKIASHPHYPRLLQAYIECQKVGAPPEIARLLEEIRRENDPCKSDAVSSSTCFGADPELDEFMEAYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASVSNVSDDGGVSSDEDLSTGDGDAQDGQLKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQALLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENFNGRILADE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00330 308 SUPERFAMILY Homeodomain-like 226 297 IPR009057 -
Gma02g00330 308 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 39 307 - -
Gma02g00330 308 Gene3D - 224 298 - -
Gma02g00330 308 Pfam KNOX1 domain 67 108 IPR005540 GO:0003677|GO:0005634
Gma02g00330 308 CDD homeodomain 237 289 IPR001356 GO:0003677
Gma02g00330 308 SMART HOX_1 227 292 IPR001356 GO:0003677
Gma02g00330 308 Pfam Homeobox KN domain 245 284 IPR008422 GO:0003677|GO:0006355
Gma02g00330 308 ProSiteProfiles 'Homeobox' domain profile. 225 288 IPR001356 GO:0003677
Gma02g00330 308 ProSitePatterns 'Homeobox' domain signature. 263 286 IPR017970 GO:0000981|GO:0006355
Gma02g00330 308 SMART ELK_2 205 226 IPR005539 GO:0003677
Gma02g00330 308 ProSiteProfiles ELK domain profile. 205 225 IPR005539 GO:0003677
Gma02g00330 308 SMART KNOX1_2 65 109 IPR005540 GO:0003677|GO:0005634
Gma02g00330 308 SMART KNOX2_2 117 168 IPR005541 GO:0003677|GO:0005634
Gma02g00330 308 Pfam KNOX2 domain 121 167 IPR005541 GO:0003677|GO:0005634
Gma02g00330 308 MobiDBLite consensus disorder prediction 178 202 - -
Gma02g00330 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 39 307 - -
Gma02g00330 308 Pfam ELK domain 205 226 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00330 Gma-Chr2 3453834 3462800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00330 1 308 Homeobox Transcription Factor Family AT1G23380 64.848 5.92e-140 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma02g00330 KNOX2 3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00330 - - gmx:100785764 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00330 02 3453834 3462800 Gma02g00330 02 3453834 3462800 ECH