Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00304 ATGATCCGAAACACAAACAGGTCGGATCGCCGGGTACTAACCTCCCCGGTGGTTCACCCATGCGATAACATCGCTCTCTCTACCCTTCTCCCTTCCCTCATCACTCTCTCCAACGCCATTTCCAATTTCCAACACAGTTCCTTCCCTTGCAACAAGCGAAACGCGAGAATCGCGATTCGCTTGACCCGGCTTCTCCAACCCTTCCTTCACGAGATCCGAGACCATCATTCGGGTCTTGCAGACCCGGCAACCCTGAGCCTCTCGGAGCTTCATTTAACCTTCCAGAAGCTTCTTTTCCTTCTTGAAGATCTCACACGTAAAGGTGCCAAGCTTTACATGTTAATGGAATCGGATCGAGTCGCAACTCAGTTTCGGGTCATATCCAGATCCGTGGCCACAGCTTTGGACGTTTTTCCTTTCGGTTCTGTGGAGATCTCTGAGGAAACTAAAGAGCATGTTTTGTTGCTGAACGAGCAAGCAAGGAGGGCAAGGCTTGAATTTGAGCAAGAAGATAAACGGGTTGTGGTGAGTGTTGTGTCGGGTTTGACCCGATTTGAGAACCGGGTTCCCCCGGGTGAGGGTGATTTGAAGTGGGTTCTTGAGTATATTGGGGTTAAAAAGTGGAGTGAGTGCAACAAAGAGGTTAAGTTTTTGGAGGGTGAAATTGGGTTTGAGTGCTTGAAGAATGAGGAGAAGGGGAAGATGGTTTTTTTGAGTAGTTTGATGGGGTTCATGAGTTATTGTAGATGTGTGGTGATCGAGGATGTTGATTGTGAAGAGAGTAACAAAAAAATTAATGTAAGAGAAAGTAGTGTTGAGAGTGAGGTGAGTCTGAGTTTGACTTTTCTTAACTCGGATGATTTTAGATGTCCAATCTCTTTGGAGTTGATGAGTGATCCTGTGACTATAGAGACAGGTCACACTTATGATCGTTCTTCGATTCTGAAGTGGTTTAGTAGTGGGAATTTGATGTGTCCCAAGACGGGTAAAAGGCTTAGCAGCACTGAAATGGTTCCAAATTTGGTGCTTAGAAGGTTGATTCAACAACATTGCTATACGAATGGCATAAGCATTCCCTTTGTTGATTCGAGTCATAGGAATCGTGAAATTACTAGGACAGTGGAGCCAGGGAGTGTGGCAGCAGAGGGAGCAATGAGAATGTTGGCTAGTTTTCTGAATGGAATGATTGAGAATGGAAGTGGAGAAGAGAAGAATAGAGGTGCTTTTGAGATAAGGCTTCTTTCCAAGACAAGCATTTTTAGTAGATCTTGTTTGGTGGAAGCTGGTTTGGCTCCTCTTCTGTTGAAGTTGTTGTCATCGAGTGATTCGTTGACTCAAGAGAATGCTGCTGCAGCCCTTCTCAACCTCTCAAAATGTGCAAAGAGTAGAAGTGTGATGGTTGAGAAATGGGGTTTGGAATTGATCATTGATGTCTTAAGGAAGGGGCTGAAGATTGAAGCTAGCCAGCATGTTGCTGCTGTGTTGTTTTACCTTAGTGCCGAGTATGGAAACTTGATAGGTGAAGAGCCAGAAGCAATACCATCATTGATAAGGCTAATCAAAGACGGCTCTTATCGAAGCAAGAAAAATGGGTTGGTTGCAATTTTCGGCCTTCTTAAGCACCCGGAAAACCATAGGAGGGTGCTAGAAGGTGGAGCAGTTTCTTCGCTAGTTGACATCTTAAAAGGGTGTGAAAAGGAAGACCTTATCACAGACTCGCTCGCAATTCTAGCAACTCTGGCAGAGAGGAGTGAGGGGATGTTAGCAATCCTTCACGGAGAGGCTTTGCATGTAGCTGTTGAAATTTTGAGTTGTTCTACTTCAAGGGTGGGAAAGGAGCACTGTGTGGCTTTGTTGCTTTCTTTGTCACTACATGGTGGAGAAGATGTGGTTGCTTATTTAGTGAAGAGAACTTCTCTAATGGGATCTTTGTATTCCCAACTCAGTGAAGGCACATCGAGAGCAAGCAAGAAAGCCAGTGCTCTCATCAGAGTCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGTTTCAAGGCTTCAGTTATTCCACAAGAACAGTTCATTCATGTTCGGTAA 2076 0.4485 MIRNTNRSDRRVLTSPVVHPCDNIALSTLLPSLITLSNAISNFQHSSFPCNKRNARIAIRLTRLLQPFLHEIRDHHSGLADPATLSLSELHLTFQKLLFLLEDLTRKGAKLYMLMESDRVATQFRVISRSVATALDVFPFGSVEISEETKEHVLLLNEQARRARLEFEQEDKRVVVSVVSGLTRFENRVPPGEGDLKWVLEYIGVKKWSECNKEVKFLEGEIGFECLKNEEKGKMVFLSSLMGFMSYCRCVVIEDVDCEESNKKINVRESSVESEVSLSLTFLNSDDFRCPISLELMSDPVTIETGHTYDRSSILKWFSSGNLMCPKTGKRLSSTEMVPNLVLRRLIQQHCYTNGISIPFVDSSHRNREITRTVEPGSVAAEGAMRMLASFLNGMIENGSGEEKNRGAFEIRLLSKTSIFSRSCLVEAGLAPLLLKLLSSSDSLTQENAAAALLNLSKCAKSRSVMVEKWGLELIIDVLRKGLKIEASQHVAAVLFYLSAEYGNLIGEEPEAIPSLIRLIKDGSYRSKKNGLVAIFGLLKHPENHRRVLEGGAVSSLVDILKGCEKEDLITDSLAILATLAERSEGMLAILHGEALHVAVEILSCSTSRVGKEHCVALLLSLSLHGGEDVVAYLVKRTSLMGSLYSQLSEGTSRASKKASALIRVLHDFYERRSSGFKASVIPQEQFIHVR 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00304 691 PANTHER U BOX DOMAIN-CONTAINING 5 681 - -
Gma02g00304 691 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 5 681 - -
Gma02g00304 691 Gene3D - 508 666 IPR011989 -
Gma02g00304 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Gma02g00304 691 ProSiteProfiles U-box domain profile. 283 357 IPR003613 GO:0004842|GO:0016567
Gma02g00304 691 Pfam Armadillo/beta-catenin-like repeat 422 457 IPR000225 GO:0005515
Gma02g00304 691 Pfam U-box domain 286 352 IPR003613 GO:0004842|GO:0016567
Gma02g00304 691 Gene3D - 363 501 IPR011989 -
Gma02g00304 691 CDD RING-Ubox_PUB 288 330 IPR045210 -
Gma02g00304 691 SMART arm_5 417 458 IPR000225 GO:0005515
Gma02g00304 691 SMART arm_5 541 582 IPR000225 GO:0005515
Gma02g00304 691 SMART arm_5 459 500 IPR000225 GO:0005515
Gma02g00304 691 SMART Ubox_2 287 350 IPR003613 GO:0004842|GO:0016567
Gma02g00304 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 358 IPR013083 -
Gma02g00304 691 SUPERFAMILY RING/U-box 286 357 - -
Gma02g00304 691 SUPERFAMILY ARM repeat 384 666 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00304 Gma-Chr2 3188677 3190891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00304 1 689 U-box Gene Family AT1G60190 44.587 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00304 - - gmx:100795816 1295.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00304 02 3188677 3190891 Gma02g00304 02 3188677 3190891 ECH