Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00295 ATGTATAGGGGTCACTCTAGAATCCTTCAAAGCAATGGTGCTATCACCAACCCCCCTATTGTttctccttcttcttcttcttcttcttcttcACCCTCAGTGCCTTATGTGTCTAACTACCAGAAACAAACAGCTCCATCCCCAAGTTCTTCATCTGGGAACAGAATAAGCCCTGCAATTCTTTTCATCATAGTAATTTTAGCTGTGCTGTTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCAAAGGTCTTCTTCCAATAATTCATCAATTCCCCAATCAAATAGATACCCTGACATGTCTGATTCAGATGCTTACCAAAGACAGTTACAGCAACTCTTCCATCTTCATGACTCAGGCCTGGATCAGGCTTTCATAGATGCTCTCCCTGTCTTCTTTTACAAAGAGATAATTGGCTTGAAAGAGCCTTTTGATTGTGCTGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAGCTCAGATTGCTTCCCATGTGTAACCATGCTTTTCACATTGAATGCATAGACACATGGTTGCTTTCCAATTCAACTTGCCCTCTTTGTAGAGGGACTCTCTATTCACCCTTTGAAAACTCAGTTTTTGACTTTGAAAGTCAACTTGAGGAAGATGGGATGTCAGGAAGTGGTGGAATTGGTTCTGTTAACAAAACTACAGAAAGTCACATAGTGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGCACTAATAATAATCAAGATGGGATGGTGGTGGAGAGAGGTGAAGGAGAGAGTAGTACTAGTAGTGTTAATTTGGATGTGAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTTTAGGCACTAGCAGTGGCAGCATGAGACAACTGAAGGGAAGAACAGCCACAAATGGAAGTTCTTTCATTGATGGAGATGCTGTTGAGGGCAAGAAAATCAACATTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTGACAGGTTCATCAGATGCTCATTTCCTTAATAGTTCTACTGTCACTTCAACTTTGCCATGGATGAATAAAGCCAGAGGAGTGTCAAAAGTGGTTTTTAGGAGCAGGAAGATGAAAGTGAAGTCAAATTGGGGTTGCTTTTTGGATGCTGTGGTTTTCTCTAGAGGGCTTGCTTTATTCGCTTTTTGGGTTAAAAAGAAGTGA 1257 0.4018 MYRGHSRILQSNGAITNPPIVSPSSSSSSSSPSVPYVSNYQKQTAPSPSSSSGNRISPAILFIIVILAVLFFILGLLHLLVRFLIKQRSSSNNSSIPQSNRYPDMSDSDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPMCNHAFHIECIDTWLLSNSTCPLCRGTLYSPFENSVFDFESQLEEDGMSGSGGIGSVNKTTESHIVNGKRVFSVRLGKFRSTNNNQDGMVVERGEGESSTSSVNLDVRRCYSMGSFQYVVADSDLRVALGTSSGSMRQLKGRTATNGSSFIDGDAVEGKKINIARKGESFSVSKIWQWSRKDKLTGSSDAHFLNSSTVTSTLPWMNKARGVSKVVFRSRKMKVKSNWGCFLDAVVFSRGLALFAFWVKKK 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00295 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 198 IPR013083 -
Gma02g00295 418 SMART ring_2 151 192 IPR001841 -
Gma02g00295 418 CDD RING-H2_PA-TM-RING 150 193 - -
Gma02g00295 418 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 371 - -
Gma02g00295 418 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Gma02g00295 418 Pfam Ring finger domain 150 193 IPR001841 -
Gma02g00295 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 371 - -
Gma02g00295 418 MobiDBLite consensus disorder prediction 12 53 - -
Gma02g00295 418 SUPERFAMILY RING/U-box 130 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00295 Gma-Chr2 3086435 3088451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00295 75 356 C3H Transcription Factor Family AT2G18650 41.562 2.53e-61 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00295 - - gmx:100794750 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00300 01 3444469 3445599 Gma02g00295 02 3086435 3088451 GST
Gma02g00295 02 3086435 3088451 Gma18g01224 18 19555538 19556692 PCT
Gma18g01224 18 19555538 19556692 Gma02g00295 02 3086435 3088451 PCT