Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00260 ATGCCGGGGCACCGCTCGAAGTCGGAGAAGCACGACGTCGACGGCGGCGGCGGTGAGAAGCAGCTCCGGCGGGACCCCTACGAGGTCCTCGGCGTCTCGCGCAACTCCACGGATCAGGAAATCAAAACCGCGTACCGCAAAATGGCGCTCAAATATCATCCGGACAAGAATGCTAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGTTACCTTCTCTTATAATATCCTGTCAGATCCTGATAAACGGCGTCAATACGACTCAGCTGGCTTTGAGGCTGTTGAATCAGACAACCAAGAGTTGGAGTTAGATCTTTCAAGTCTGGGTGCTGTCAATACAATGTTTGCAGCACTTTTTAGTAAACTTGGTGTGCCAATTAAGACAACTGTATCTGCCACAGTTTTGGAAGAGGCACTCAATGGTTTGGTGACCATTCGTCCACTGCCATTGGGACATAATATATCTAAAAGGGTTGAGAAGCAATGTGCACACTTCTATTCAGTTACAATAACAGAAGAGGAAGCACGAGCTGGATTTGTTTGTCGAGTACATTCGTCAGACAAAAGCAAGTTCAAGTTATTGTATTTCGATCAGGAAGACAACAGTGGTTTAAGTCTTGCACTCCAGGAAGACAGTGCAAAAACAGGGAAGGTTACCTCTGCTGGGATGTATTTTCTTGGGTTTCCTGTTTATCGATTAGATCAAACAATGAACTCTATAGCTGCTGCTAAGGATCCAGATACATCATTTTTCAGAAAGCTAGACGGGTTTCAGCCCTGTGAATTAACAGAATTGAAGGCTGGTACCCATGTATTTGCTGTTTATGGTGACAACTTTTTCAAAAGTGCCAATTATACAATAGAAGCCCTGTGTGCTGCACCCTTTAGTGAAGAAAAAGAAAATTTAAGAAACATAGAAGCTCAAATTTTGTCTAAAAGGGCAGAAATATCAAAGTTTGAGGCAGAATATCGAGAGGTTCTGGCACAATTCTCAGAGATGACAAATAGATATGCACATGAAATGCAAGCAATTGATGAGCTACTGAAGAATAGAAATGAAATACAGGCATCATACACCAGTGCTCCTTTAAAACGAACTACAAGTAGGAGCAGAAGTAAAAATTCTTCCAAGGAGGCAAAAGAAGATGGCCAAGCAAAGGAAAAGAGGAGTACAAGAGAACGGCCAAAGAAGAAGAAATGGTATAACCTTCACTTAAGAGTTGATAAGAGAAAGGCTTGCTAA 1242 0.4259 MPGHRSKSEKHDVDGGGGEKQLRRDPYEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGLVTIRPLPLGHNISKRVEKQCAHFYSVTITEEEARAGFVCRVHSSDKSKFKLLYFDQEDNSGLSLALQEDSAKTGKVTSAGMYFLGFPVYRLDQTMNSIAAAKDPDTSFFRKLDGFQPCELTELKAGTHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRNIEAQILSKRAEISKFEAEYREVLAQFSEMTNRYAHEMQAIDELLKNRNEIQASYTSAPLKRTTSRSRSKNSSKEAKEDGQAKEKRSTRERPKKKKWYNLHLRVDKRKAC 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00260 413 MobiDBLite consensus disorder prediction 1 35 - -
Gma02g00260 413 MobiDBLite consensus disorder prediction 371 390 - -
Gma02g00260 413 Pfam DnaJ domain 25 87 IPR001623 -
Gma02g00260 413 ProSiteProfiles dnaJ domain profile. 25 90 IPR001623 -
Gma02g00260 413 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 1 412 - -
Gma02g00260 413 CDD DnaJ 25 79 IPR001623 -
Gma02g00260 413 MobiDBLite consensus disorder prediction 358 401 - -
Gma02g00260 413 PANTHER DNAJ DOMAIN-CONTAINING PROTEIN-RELATED 1 412 - -
Gma02g00260 413 Gene3D DnaJ domain 17 108 IPR036869 -
Gma02g00260 413 PRINTS DnaJ domain signature 27 45 IPR001623 -
Gma02g00260 413 PRINTS DnaJ domain signature 45 60 IPR001623 -
Gma02g00260 413 PRINTS DnaJ domain signature 62 82 IPR001623 -
Gma02g00260 413 PRINTS DnaJ domain signature 82 101 IPR001623 -
Gma02g00260 413 SUPERFAMILY Chaperone J-domain 24 94 IPR036869 -
Gma02g00260 413 ProSitePatterns Nt-dnaJ domain signature. 67 86 IPR018253 -
Gma02g00260 413 SMART dnaj_3 24 82 IPR001623 -
Gma02g00260 413 MobiDBLite consensus disorder prediction 1 27 - -
Gma02g00260 413 Coils Coil 295 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00260 Gma-Chr2 2744521 2749244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00260 23 88 C2H2 Transcription Factor Family AT1G74250 42.254 4.62e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00260 - - gmx:100800929 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00260 02 2744521 2749244 Gma02g00260 02 2744521 2749244 ECH
Gma01g00333 01 3898132 3902666 Gma02g00260 02 2744521 2749244 GST