Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00242 ATGGATAGGGTTAGCAAGAAAACTACAATTCAGAGACTCTGCGATCACTCTGATTTGGCTCCTCCGAGAGAGAGAGTGTTGCTTCTCTGCTTTTTGTGGTTTGAGATGAAGAGGTCCAGAGATGAAGTTTTCACGAGTTGTTCTCAACTCAAACGGCCCGTGGTGTCTTCACGAGGAGAAGCGTCTGGGCAACCGcagataatgaacggaggtgctcagaaactgacaactaatgatgccctagcatatctcaaggcagtaaaggatatatttcaagataagagggacaagtatgatgactttttggaggttatgaaagatttcaaggctcaaagaattgatactgcgggtgtcattgcaagagtgaaggaactgtttaaaggccatagagatcttatattgggatttaacaccttcttgcctaagggttacgaaatcacacttccatcagaggatgaACAACTTGCCCCAAAGAAACCTGTTGAATTTGAAGAGGCTATAAATTTTGTGAACAAGATAAAGactcgttttcaaggtgatgatcatgtgtacaaatcatttcttgacatattgaatatgtacagaaaggaaaacaaatctattactgaggtctaccaggaggttgctgctattttccaggaccaccctgatcttcttgatgagtttactcattttctTCCAGATGCTTCTGCAGCTGCCTCTACTCATTTTGTTTCTGCTCGGAATTCTATGCTTCGTGATAGGAGCTCTGCAATGCCAACAATACGACAATTGCACGTTGAAAAGCGAGAAAGGACCATTGTTTCACATGGTGATCATGACCCCAGTGTTGATCGTCCTGACCCAGATAACGACAGAGGTCTGTTAAGGATAGAAAAGGAGAGGAGACGTGTGGAGAAGGAAAAGGAACGTAGAGAAGATAGAGACAAGAGAGATCGTGAAAGGGATGATAGAGATTTTGAGCATGATGGGGCTCGAGATAGGGAGCGATTCTCTCACAAACGGAATCGTAAGGTTGAAGACTCTGGAGCTGAACCATTTCTTGATGCAGATGAAAATTTTGGTGCGCCTCCTATGCCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAATTTGCTTTCTGCGAAAATGTCAAAGAAAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGCTTACATATCTACAGCAGGGAAATAATTACCCGACATGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTTCAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATAAAGGTTGACGACGGGGATAGAGATCGGGATCGAGATAGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGACCGTGAATTCCGAGAAAGGGACAAATCTACTGTGATTGCCAACAAGGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGAAAAGTATTTATCCAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGCACTCCTAGTTACCGCCTCTTACCGAAAAATTACCCAATACCTGTAGCTAGCCAGAAAACAGAACTTGGTGCCGGAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAGTAATATAATTAAAGGAGACAGCCTAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATTGAACGGTTATACGGTGACCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAAGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGGTGAAATATATGCTAAGAACTATCACAAATCTCTTGATCACCGTAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACCAAAGCCTTGCTGGCAGAAATCAAAGAAATCAGTGAAAAGAAACGCAAGGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGACGGCCAATTCTTCCAAACTTGGAGTTTAAGTATTCTGATCCAGATATTCATGAAGATTTATATCAGCTCATAAAATATTCCAGTGGAGAAATTTGCACAACCGAACACGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTGTTCCTTGTCGGCCCCAGGGTGCAGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATCATGTCAAAAATGGCACTGCAACTGTTGCTGAAAGTGACTGTAGCCCTGTTGTGGGTGCTATCATAATGAATCCAAAGCATATAAATGTTTCCAGAAATGGGGATGATTGTATGCCATTAGATCAATCAACTTCTAATAAAGCATGGCAGTCAAATGGTGGGGTTAGAGAGGATAGGTATCTTGATGACTGTGCATTGCGTAAAACTGAAACTTTGGGCAGCAATACACAGCATGGTAAAATGAATCGTATTGCATTCACACCTGATGGACCATCAGGATTTAACAATAAGCAAGACCAGTCCAGTGAACGGTTAGTGAATGCTAATGTCTCACCAGCATCTGGAATGGAGCAAAGCAATGGAAGGACAAACATAGATAATTTGTCAGGACTCACTGCCACTCCAACTAGACCTGGTAATGCTTCTGTTGAGGGAGGACTTGATATACCGTCATCAGAGGGTGGTGATTCTACAAGACTGGGTACATCCACAAATGGGGCCATCACCGGAGGCACCAAAGTTCACCGGTACCAAGAGGAATCAGTTCGAGCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAAGATAACTCTGAAGTTTATGGAGGTAATGGTTTGGATGCAGTGCATAAAGGAAAGGATGGTGGTGTGAGTCGGCAATACCAAAATAGACACGGGGAAGAAGTTTGTGGTGAAACTAGAGGAGAAAACGATGCTGATGCTGATGATGAAGGTGAAGAAAGCCCTCACAGGTCATCAGAGGACAGCGAAAATGCATCTGAAAATGTTGATGTTTCTGGAAGTGAGTCAGCTGATGCTGAGGAGTGTTCTCGAGAAGAGCATGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCCGAAGGAATAGCTGATGCTCATGATGTTGAAGGTGATGGAATGCCATTGCCATATTCTGAACGCTTTCTACTAACTGTGAAGCCTCTAGCAAAGCATGTTCCTCCAATGTTACATGAGAAGGACATGAATTCACGAGTTTTCTATGGAAACGATTCCATTTATGTGCTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCCGCCGATAGGAAATGGAAGGCTTCAAGTGATACAAGCTCCACCGATCAATATGACAGGTTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAATTGGAATTCAATCATATGTCTTATTCACATTAGACAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATACCAAGCTTTTACAACTATATGCATATGAGAAATCGAGAAAACCCGGAAAATTTGTTGACATGGTTTATCATGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTATTGAATATTCACCTGGACCAATGAAACTGTCTATTCAACTGATGGACTCTGGACATGATAAACCTGAAGTGACTGCTGTGTCAATGGACCCTAATTTTTCAACCTATCTACACAATGACTTCCTATCTGTCGTCCCTGACAAAAAAGAGAAGTCAGGAATTTTCTTGAAGAGGAATAAACGTAGATATGCTGGTAATGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAAATTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTCTCATATGTTTTAGATACCGAAGACTTTTTGTTTCGGATAAGAAGGAAAAAAAGAGTTTTGCATCCAAAGAGTTCAGGCGCCCATGAACAGGCACAGTCTCCAAAGAGTTCAAGCAGAGTACAACGATTCCGCAATTTGTTTTCCATTACATGA 4398 0.3743 MDRVSKKTTIQRLCDHSDLAPPRERVLLLCFLWFEMKRSRDEVFTSCSQLKRPVVSSRGEASGQPQIMNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQLAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHFVSARNSMLRDRSSAMPTIRQLHVEKRERTIVSHGDHDPSVDRPDPDNDRGLLRIEKERRRVEKEKERREDRDKRDRERDDRDFEHDGARDRERFSHKRNRKVEDSGAEPFLDADENFGAPPMPSTCDDKNSLKSMYSQEFAFCENVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQIKVDDGDRDRDRDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGSKMSLYPSKEKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQKTELGAGVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINSNIIKGDSLIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWGEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFKYSDPDIHEDLYQLIKYSSGEICTTEHVDKVMKVWTTFLEPMLCVPCRPQGAEDTEDVVKAKNNHVKNGTATVAESDCSPVVGAIIMNPKHINVSRNGDDCMPLDQSTSNKAWQSNGGVREDRYLDDCALRKTETLGSNTQHGKMNRIAFTPDGPSGFNNKQDQSSERLVNANVSPASGMEQSNGRTNIDNLSGLTATPTRPGNASVEGGLDIPSSEGGDSTRLGTSTNGAITGGTKVHRYQEESVRAFKSEREEGELSPNGDFEEDNSEVYGGNGLDAVHKGKDGGVSRQYQNRHGEEVCGETRGENDADADDEGEESPHRSSEDSENASENVDVSGSESADAEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMPLPYSERFLLTVKPLAKHVPPMLHEKDMNSRVFYGNDSIYVLLRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVAADEMDTKLLQLYAYEKSRKPGKFVDMVYHENARVLLHDENIYRIEYSPGPMKLSIQLMDSGHDKPEVTAVSMDPNFSTYLHNDFLSVVPDKKEKSGIFLKRNKRRYAGNDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLFRIRRKKRVLHPKSSGAHEQAQSPKSSSRVQRFRNLFSIT 1465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00242 1465 Pfam Sin3 family co-repressor 538 628 IPR013194 -
Gma02g00242 1465 PANTHER SIN3B-RELATED 40 1435 IPR039774 GO:0003714
Gma02g00242 1465 SUPERFAMILY PAH2 domain 73 142 IPR036600 GO:0006355
Gma02g00242 1465 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 40 1435 - -
Gma02g00242 1465 Coils Coil 288 311 - -
Gma02g00242 1465 ProSiteProfiles PAH domain profile. 369 438 IPR003822 GO:0006355
Gma02g00242 1465 Gene3D Paired amphipathic helix 158 230 IPR036600 GO:0006355
Gma02g00242 1465 SUPERFAMILY PAH2 domain 367 435 IPR036600 GO:0006355
Gma02g00242 1465 MobiDBLite consensus disorder prediction 267 367 - -
Gma02g00242 1465 Gene3D Paired amphipathic helix 79 141 IPR036600 GO:0006355
Gma02g00242 1465 MobiDBLite consensus disorder prediction 941 968 - -
Gma02g00242 1465 MobiDBLite consensus disorder prediction 1107 1132 - -
Gma02g00242 1465 MobiDBLite consensus disorder prediction 984 1000 - -
Gma02g00242 1465 Pfam C-terminal domain of Sin3a protein 1179 1425 IPR031693 -
Gma02g00242 1465 MobiDBLite consensus disorder prediction 941 1132 - -
Gma02g00242 1465 MobiDBLite consensus disorder prediction 1436 1455 - -
Gma02g00242 1465 MobiDBLite consensus disorder prediction 1005 1023 - -
Gma02g00242 1465 MobiDBLite consensus disorder prediction 1441 1455 - -
Gma02g00242 1465 SUPERFAMILY PAH2 domain 158 228 IPR036600 GO:0006355
Gma02g00242 1465 MobiDBLite consensus disorder prediction 267 345 - -
Gma02g00242 1465 ProSiteProfiles PAH domain profile. 73 143 IPR003822 GO:0006355
Gma02g00242 1465 MobiDBLite consensus disorder prediction 1080 1094 - -
Gma02g00242 1465 Pfam Paired amphipathic helix repeat 96 140 IPR003822 GO:0006355
Gma02g00242 1465 Pfam Paired amphipathic helix repeat 391 435 IPR003822 GO:0006355
Gma02g00242 1465 Pfam Paired amphipathic helix repeat 182 226 IPR003822 GO:0006355
Gma02g00242 1465 ProSiteProfiles PAH domain profile. 159 229 IPR003822 GO:0006355
Gma02g00242 1465 SMART hdac_interact2seq4b 535 635 IPR013194 -
Gma02g00242 1465 Gene3D Paired amphipathic helix 367 439 IPR036600 GO:0006355
Gma02g00242 1465 MobiDBLite consensus disorder prediction 1048 1072 - -
Gma02g00242 1465 MobiDBLite consensus disorder prediction 466 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00242 Gma-Chr2 2436950 2450060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00242 64 167 WRKY Transcription Factor Family AT4G12020 52.830 2.16e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma02g00242 Sin3a_C 5.5e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00242 K11644 - gmx:100811928 2776.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00242 02 2436950 2450060 Gma02g00242 02 2436950 2450060 ECH
Gma01g00347 01 4110764 4123066 Gma02g00242 02 2436950 2450060 GST
Gma02g00242 02 2436950 2450060 Gma18g01179 18 18095949 18108109 PCT
Gma18g01179 18 18095949 18108109 Gma02g00242 02 2436950 2450060 PCT