Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00197 ATGTTGTATTTTTTGAATGAGCCTTTGAGCAGACATTATCAAGTAGTCATAGTAGATTTTATGAATGATTTATTTTTTCATCCTATGACTAACGAAATTGaagttagaaaagttttgaaggtggagccacttctggatgctactggccacttatttagcttaaGCGTTCTGAAAAAACCTGCGAACATGGAGGGAATTCAGGAAAGCATCTTTCTCCCTGTTACAAGGGCAGACCTAGAAGTTTTAAGGTCACTTTTCAATTGTATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAAAGCCAGAGGTATATAGTCAAGTGAATAGTACCAACCCCAGATATGGAGCAGACAATGAATGGAACAGATAG 381 0.315 MLYFLNEPLSRHYQVVIVDFMNDLFFHPMTNEIEVRKVLKVEPLLDATGHLFSLSVLKKPANMEGIQESIFLPVTRADLEVLRSLFNCIMPYLLGWNAFGNSIKPEVYSQVNSTNPRYGADNEWNR 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00197 126 Gene3D Transcriptional Coactivator Pc4; Chain A 11 106 IPR009044 GO:0003677|GO:0006355
Gma02g00197 126 SUPERFAMILY ssDNA-binding transcriptional regulator domain 28 126 IPR009044 GO:0003677|GO:0006355
Gma02g00197 126 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 25 126 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gma02g00197 126 Pfam Whirly transcription factor 29 85 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gma02g00197 126 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 25 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00197 Gma-Chr2 1887256 1889588 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00197 26 126 Whirly Transcription Factor Family AT1G14410 56.436 8.70e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gma02g00197 Whirly 1.9e-10 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00197 - - gmx:106795219 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00197 02 1887256 1889588 Gma02g00197 02 1887256 1889588 ECH