Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00192 ATGTCGCAGATTCAGTCCATTACCTTGAAGCACCTCTCACTACCAACCCACACTTTCGTTCCTTCAAAGTTCAAAATTCCTTTGAACCGCAATTTTTCTTTAACACCCAGATTCACATTCTCTTCATCACTCTCTGTCAAATGCTACCACCCCAACCTCGTTCAACCCAAGCCATTCCCTCCACTGCCACAACGCCCTCCATTTGCAGAATTGCCGCAGCAAAGGGTGTACGTGGGTTACTCCGTTTACACGAAGAAGGGCATGCTCACCGTGATTCCTAGACCTCCGGAATTTGAATCGAAAAGTTCTGGGGCGTTCAAAGTGTCCAAGGAAGGTTATGTTGTGCTCCAGTTTGCTCCCTCAGTTGGTGCTGATGAGCCCATATATGATTGGAACCACAAGCAGACATTCTCACTATCAGTGAGTGAAATGGGAACTCTAATTATCCTTGGTGCAAGGGATTCTTGGGAATTTTCTCATGAGACTGTTAAGTTGAAAAGcagcaaaattgatgttagaaaagttttgaaggtggagccacttctggatgctactggccacttatttagcttaaGGGTTCTGAAAAAGCCTGCGAACATGGAGGGAATTCAGAAAAGCATCTTTCTCCCTGTTACAAGGGCAGATCTAGAAGTTTTAAGGTCACTTTTCAATTATATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAAAGCCAGAGGTATATAGTCAAGTGAATAGTACTAACCCCAGATATGGAGCAGACAATGAATGGAACAGATAG 792 0.4015 MSQIQSITLKHLSLPTHTFVPSKFKIPLNRNFSLTPRFTFSSSLSVKCYHPNLVQPKPFPPLPQRPPFAELPQQRVYVGYSVYTKKGMLTVIPRPPEFESKSSGAFKVSKEGYVVLQFAPSVGADEPIYDWNHKQTFSLSVSEMGTLIILGARDSWEFSHETVKLKSSKIDVRKVLKVEPLLDATGHLFSLRVLKKPANMEGIQKSIFLPVTRADLEVLRSLFNYIMPYLLGWNAFGNSIKPEVYSQVNSTNPRYGADNEWNR 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00192 263 Pfam Whirly transcription factor 82 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gma02g00192 263 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 42 263 - -
Gma02g00192 263 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 42 263 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gma02g00192 263 Gene3D Transcriptional Coactivator Pc4; Chain A 69 251 IPR009044 GO:0003677|GO:0006355
Gma02g00192 263 SUPERFAMILY ssDNA-binding transcriptional regulator domain 74 263 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00192 Gma-Chr2 1848659 1853068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00192 31 263 Whirly Transcription Factor Family AT1G14410 50.215 2.04e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gma02g00192 Whirly 1.6e-41 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00192 - - gmx:100775220 504.212