Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00181 ATGTCTAGCAGAAGATCTCGTTCAAGACAATCCGGTGCTTCCGCTGAGATCACTGATGCTCAAATCACCGATCTCGTTTCCAAGTTACAACAACTTATCCCTGAGCTTCGTGCTAGGCGCTCCgacaagGTTTCAGCTGCTAAGGTATTGCAGGAGACATGCAACTACATAAAGAACTTGCACAGAGAGGTTGATGATCTAAGTGACCGATTATCGGAGCTTTTGGCTAACACAGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 282 0.4433 MSSRRSRSRQSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00181 93 Coils Coil 57 77 - -
Gma02g00181 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
Gma02g00181 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Gma02g00181 93 Gene3D - 19 89 IPR036638 GO:0046983
Gma02g00181 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Gma02g00181 93 CDD bHLH_AtPRE_like 17 77 - -
Gma02g00181 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Gma02g00181 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00181 Gma-Chr2 1682233 1683493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00181 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.213 1.27e-36 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma02g00181 HLH 8.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00181 - - gmx:100804830 167.162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00181 02 1682233 1683493 Gma02g00181 02 1682233 1683493 ECH
Gma02g00181 02 1682233 1683493 Gma06g01712 06 17282371 17284398 ECH
Gma02g00181 02 1682233 1683493 Gma04g01671 04 45393776 45395428 ECH
Gma02g00181 02 1682233 1683493 Gma19g00188 19 2306892 2310132 ECH