Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00178 ATGAAGAACAGATACTTGGCACATGCTCAACACCATCCTCCATTTCATGACTCTGCACTTCCAAAGAGAAAGTTGGATAAGAGTTGCACAGTTAAATCCCCAAGCCAATATGCCATGGATGCCATCATATCAAAAGGAAAATCTTCAAATAAACCACTAGTTGTTGTTGGTTGTTTCCCTCAAGGAAGTCGAGATTTGAAAGACCTCGAACGGATCAGCATAATTGGAGTCCAGCAAATCAATCGTGTTTTTGAAATTGTAGAGAAGACTTTAAAAGGTCATGAAGTGCGCCTTTTGACCTGTCAGAAATTGGCAACACTTGAGCTTCAAAAGGTAAGGAAGAACGAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGTTCGGGGTCACCTAAGAAGTTACACAATTGATAGCCTTATTGGGTGTGTAAAATCTATGATATCCGAAGGGGTTAGAGCTTTGTTGTGGAAAGTTGTCTACTCTGAGCACTCAGATCCTAAGTCACTGTGGGTTGCTACCTTGGATCCAAATGGTGCAATCACTTTTTATGATCTCAACAAAAGGAGGGCTCCAAACCCTGAGGCGGTTAAGGAAACTCCTCAACTTTTCCTTTTTGTTACCCTTAGTAGTGATGCTGGACATGGCAACAAAAAGGGAAGGAATGACACGGTGCTAGTAGTTGTCATATTTGTTCTCACAGTTCTGATTATAGTTGGTCTTATAACAGGATTCTGGTACTACTACAAGAGGAAGACGAATGTTGCTAAGTATCCTCAAGATAACTTGGACGAAGATGATAATTTCTTGGACAGACTTTCTGGGATGACTGCACATTTTACTTTTGCTGCTTTTTGTAGAGCAACTGAGGATTTTTCCAGAAACATTGCAGAAGGAGGGTTTGGCTCGGTGTATCTAGGTGTGCTTGAAGATGGCACTCAATTGGCTGTAAAAAAATTGGAAGGTGTTGGACAAGGTGCAAAAGAGTTTAAAGCGGAAGTGTCCATAGTTGGAAGTATTCATCATGTTCATTTGGTTAAGCTATCAGTTATTGTTCAAGTTGAAGAGATCTTCCCTCATATGACAGAGTTAACAAGTTTTTGTTCAAGTCACCTATGTAACAAGGATATACTCTAG 1170 0.4009 MKNRYLAHAQHHPPFHDSALPKRKLDKSCTVKSPSQYAMDAIISKGKSSNKPLVVVGCFPQGSRDLKDLERISIIGVQQINRVFEIVEKTLKGHEVRLLTCQKLATLELQKVRKNEFVEILPINVGCLGACTYCKTKHVRGHLRSYTIDSLIGCVKSMISEGVRALLWKVVYSEHSDPKSLWVATLDPNGAITFYDLNKRRAPNPEAVKETPQLFLFVTLSSDAGHGNKKGRNDTVLVVVIFVLTVLIIVGLITGFWYYYKRKTNVAKYPQDNLDEDDNFLDRLSGMTAHFTFAAFCRATEDFSRNIAEGGFGSVYLGVLEDGTQLAVKKLEGVGQGAKEFKAEVSIVGSIHHVHLVKLSVIVQVEEIFPHMTELTSFCSSHLCNKDIL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00178 389 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 222 360 - -
Gma02g00178 389 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 163 209 - -
Gma02g00178 389 SUPERFAMILY Protein kinase-like (PK-like) 286 367 IPR011009 -
Gma02g00178 389 Gene3D - 119 171 - -
Gma02g00178 389 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 163 209 - -
Gma02g00178 389 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 222 360 - -
Gma02g00178 389 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 1 92 IPR013848 GO:0035596|GO:0051539
Gma02g00178 389 MobiDBLite consensus disorder prediction 1 21 - -
Gma02g00178 389 ProSiteProfiles Protein kinase domain profile. 301 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g00178 389 Gene3D Phosphorylase Kinase; domain 1 266 367 - -
Gma02g00178 389 ProSitePatterns Methylthiotransferase radical SAM domain signature. 121 141 IPR020612 GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00178 Gma-Chr2 1635935 1637352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00178 244 359 Receptor kinase-like Gene Family AT5G20050 36.441 7.77e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gma02g00178 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00178 K15865 - gmx:106797172 734.561