Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00125 ATGGAGCTCTCCGTGGTTGCAAGAGACATGGAAGAAGTTGTATTGCTGGTTGATGATTTGAGATCACTTTCTGGGATTTCTCGCTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTCCAAAACCTTGGAAGCTCCTTGTGCTTGTTCTGGGACAGTTAAGTTTGCTCACAGAGATTGCATTCAGACATGGTGCGATGAGAAAGGAAATACAACTTGTGAAATATGTCTCCAGCAATATGAACCTGGATATACAGCAGCCCCAAAGAAATCGCAAATAACTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATTTCAAGGAATGAACAAGAACCGTTAAACACAAGAATAGTGGGTATCGTTGAAGGAAACAATTACTCTGAATGCACGTATGCTGCAGATAGGACCGCGGCTTGTTGTCGATCCCTGGCTTTAGCTTTTACACTCATCTTGCTTGTAAGACATCTTTTTGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACGGTCTTTTTACTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAAGGCGATCGGAGCTATTCATGACAATATTAAGCGTCACCATCATGAGGATTCTGACGATGACTCATCGATATCTGATGGAGATGATGAAGAAAATGAGACACCAAATGATGAAATTTTAAGACATTCACAATCATAG 711 0.4008 MELSVVARDMEEVVLLVDDLRSLSGISRCRICHEEEFESSKTLEAPCACSGTVKFAHRDCIQTWCDEKGNTTCEICLQQYEPGYTAAPKKSQITDAAMTIRDSLQISRNEQEPLNTRIVGIVEGNNYSECTYAADRTAACCRSLALAFTLILLVRHLFALLTDGMEDYPFTILTVFLLRASGIIIPMYIIIKAIGAIHDNIKRHHHEDSDDDSSISDGDDEENETPNDEILRHSQS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00125 236 MobiDBLite consensus disorder prediction 205 236 - -
Gma02g00125 236 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Gma02g00125 236 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 6 233 - -
Gma02g00125 236 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Gma02g00125 236 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Gma02g00125 236 SUPERFAMILY RING/U-box 28 81 - -
Gma02g00125 236 SMART ringv_2 28 77 IPR011016 GO:0008270
Gma02g00125 236 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 233 IPR033275 -
Gma02g00125 236 Pfam Protein of unknown function (DUF3675) 82 194 IPR022143 -
Gma02g00125 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 87 IPR013083 -
Gma02g00125 236 CDD RING_CH-C4HC3_MARCH 29 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00125 Gma-Chr2 1205906 1208609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00125 29 76 C3H Transcription Factor Family AT2G37950 44.898 3.81e-07 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00125 02 1205906 1208609 Gma02g00125 02 1205906 1208609 ECH
Gma10g00129 10 1234567 1237565 Gma02g00125 02 1205906 1208609 GST
Gma19g02052 19 49449994 49452281 Gma02g00125 02 1205906 1208609 PCT
Gma03g02016 03 45772487 45775138 Gma02g00125 02 1205906 1208609 PCT
Gma02g00125 02 1205906 1208609 Gma19g02052 19 49449994 49452281 PCT
Gma02g00125 02 1205906 1208609 Gma03g02016 03 45772487 45775138 PCT