Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00116 ATGGTGTCCAAACCTACCGACTCGGCTTCCAAACCTCGAAAACAACTTGGAGAGCCAGCAAATGATGGTATTGGAAGCTTGTCCCTCGAGTTAAATCAGTTAAAAAAGCAAATCCAGGCGGAGAGAATTGTGTACATTAAAGAAAAAATTCGGAGCAATGAGAAGAAGCTACAGTGTCATATGTCAGGAGTCCTGTCAGAAACATCAACAAGGGGTTCTTCACAGACAGAGGAAAATAGGAAAAATCCAattctttcttcaagaattgaccatcctttatgtaaattcagtggtttctctccagtctggggagacaaggaccacaacaatcaagatgtattatctgctacaagtatcaaaatgccttatattgaaacactaccaccatatacctcttggatatttctggacagaaatcagaggatggcggaagatcagtcagtggttggaagaagacgtatatactatgaTCAACATGGAAGTGAAGCACTGATATGTAGCGACAGTGAGGAGGAGTTAACAGAACCTGAGGAAGAAAAACATGAATTTTCTGAGGCTGAAGATCGTGTCATATGGATGGCATTTGAGGAATATGGGTTAAACAAGGAGGTACCAAATATTGTTAGTGAATTTGTTGGGGGCACCAGTTTAGAAATTCAGGAGAGGTACAAAACTATCAAGGAAAAGAACATTGGAAGGTTGGACCAGCCTTCTCAAAACTCAGGAGAATATGAATCTACTATTGGCATATGTCTAGAGAAAAGCCTGAGTGCTGCATTAGATTCTTTTGATAATCTTTTTTGTCGCCGTTGCCTGATTTTTGACTGTCGTCTGCATGGCTGTTCTCAACCTTTAATATATCCTAGTGAAAAGCAGACAGTTTGGTCTGATCCTGAAGGAGACAGGAAACCTTGCAGTGATCAGTGTTACCTTCAGCAGTTAAAGGTAGTAAAAAATGTGACAGAAGATTCAACTTCTGGGTCTGATCAGAATAAGAGAACTACAATTACAGAAGAGGCAGATGTGATATTGGCTCCGTCCATTATAGAGGAACCTAGTAATCAGAGTATAGTACCTTTTCAAACAGAAGTTGATTGTCATGGATCTCTCAATTTAAATGTTCCTATCTCAGTGAGTGTGGAAAAACGGAAAGTCCTAAATCAGTCAGACATGTCACCCCGTGACTCAACACTCCATCCCGATGATTGTCAGAATTCTTATAAAAAGCGGAAGGCAATCTCTGATGCTGTAGTTACTGTAAATAGTGATTCTAGCAAGAAAATAAGTTTGGGTGCATGTGGTGAAAGTATACATACAATTACTAGTGCAATTTTGGACAAATCTGTTAAAGATAACTCAATTAAATTAATAGATTCTTCTAGCACTTGCCCTAGTGATGAGCAGGACAAAAGTATTGGTGATGGACCAAAAGATCCTACAAATGAGACAGAATTTAAGATGTCCAATTCAATGGAGGGGATAGTTGATGGGATGCTAAGTCTCTCAGATTGGAAACCTCTGGAGAAAGAACTATACTTAAAGGGAGTAGAACTGTTTGGCAGAAACAGTTGCCTCATAGCAAGGAACTTACTTCCTGGTCTGAAGACTTGTATGGAAATAGCTAGTTACATGCATTCTGGAGGAGTGTCAATGCCCCACGGATCTATTGTTGCTCCTAGTTCAATCATGGAAGAAATTGGAAAATTTGATGCTGACTGCACAGACCAGGAGATGCCATCTAGGTCACGGTTGCTGAGGAAAAGGGGCAAAACAAGGAAGTTTAAATATTCTTGGAAATCTGCTGGCCACCCATCAATATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGTCAATGTGTGGAAAGGAATGTACTTGTATTAATGGTGGAACTTGCTGTGAGAAATATTGCGGTTGTTCAAAAAGCTGCAAAAATCGGTTCAGAGGATGCCATTGTGCCAAGAGTCAGTGTAGAAGTCGACAATGCCCATGTTTTGCTGCAGGACGGGAATGTGATCCAGATGTCTGTCGGAATTGCTGGGTTAGTTGTGGGGATGGTTCGTTAGGGGAGCCACCTCGGCGTGGAGAAGGGCAATGTGGAAATATGAGGCTTCTATTGAGACAACAACAAAGGATTCTCTTGGCAAAGTCTGATGTTGCAGGATGGGGAGCCTTCTTGAAGAACCCGGTTAACAAAAATGATTACTTAGGAGAGTACACAGGAGAACTGATCTCCCACCGAGAAGCCGATAAGCGTGGGAAAATATACGATCGCGCCAACTCGTCTTTTCTTTTTGACTTGAATGATCAGGCAAGTTACGTTCTTGATGCTTATCGCAAAGGAGACAAGTTGAAATTTGCAAACCACTCATCAAACCCCAATTGCTATGCAAAGGTGATGCTGGTTGCTGGAGATCACCGAGTAGGCATATTTGCCAAGGAACACATCGATGCTAGTGAGGAGCTCTTCTATGATTATCGTTATGGTCCCGATCAAGCACCACCATGGGCACGTAAACCTGAGGGTTCTAAGAGAGACGAATCAACAGCTCCTCAAGGCAGGGCTAAGAAACACCAGTCTCATTGA 2616 0.3846 MVSKPTDSASKPRKQLGEPANDGIGSLSLELNQLKKQIQAERIVYIKEKIRSNEKKLQCHMSGVLSETSTRGSSQTEENRKNPILSSRIDHPLCKFSGFSPVWGDKDHNNQDVLSATSIKMPYIETLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQHGSEALICSDSEEELTEPEEEKHEFSEAEDRVIWMAFEEYGLNKEVPNIVSEFVGGTSLEIQERYKTIKEKNIGRLDQPSQNSGEYESTIGICLEKSLSAALDSFDNLFCRRCLIFDCRLHGCSQPLIYPSEKQTVWSDPEGDRKPCSDQCYLQQLKVVKNVTEDSTSGSDQNKRTTITEEADVILAPSIIEEPSNQSIVPFQTEVDCHGSLNLNVPISVSVEKRKVLNQSDMSPRDSTLHPDDCQNSYKKRKAISDAVVTVNSDSSKKISLGACGESIHTITSAILDKSVKDNSIKLIDSSSTCPSDEQDKSIGDGPKDPTNETEFKMSNSMEGIVDGMLSLSDWKPLEKELYLKGVELFGRNSCLIARNLLPGLKTCMEIASYMHSGGVSMPHGSIVAPSSIMEEIGKFDADCTDQEMPSRSRLLRKRGKTRKFKYSWKSAGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKECTCINGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGEGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQASYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKRDESTAPQGRAKKHQSH 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00116 871 SMART sant 500 550 IPR001005 -
Gma02g00116 871 SMART sant 179 229 IPR001005 -
Gma02g00116 871 ProSiteProfiles CXC domain profile. 607 706 IPR026489 -
Gma02g00116 871 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 871 IPR025778 GO:0031519
Gma02g00116 871 SUPERFAMILY SET domain 621 840 IPR046341 -
Gma02g00116 871 MobiDBLite consensus disorder prediction 848 864 - -
Gma02g00116 871 Pfam CXC domain 659 690 IPR041355 -
Gma02g00116 871 SMART CXC_2 655 692 IPR033467 -
Gma02g00116 871 MobiDBLite consensus disorder prediction 1 23 - -
Gma02g00116 871 Gene3D SET domain 621 839 IPR046341 -
Gma02g00116 871 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 15 869 - -
Gma02g00116 871 ProSiteProfiles SET domain profile. 720 837 IPR001214 GO:0005515
Gma02g00116 871 MobiDBLite consensus disorder prediction 458 483 - -
Gma02g00116 871 SMART set_7 720 843 IPR001214 GO:0005515
Gma02g00116 871 Pfam SET domain 731 836 IPR001214 GO:0005515
Gma02g00116 871 MobiDBLite consensus disorder prediction 842 871 - -
Gma02g00116 871 MobiDBLite consensus disorder prediction 62 81 - -
Gma02g00116 871 CDD SET_EZH 720 838 - -
Gma02g00116 871 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 15 869 IPR045318 GO:0006338|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00116 Gma-Chr2 1132150 1140854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00116 709 840 C2H2 Transcription Factor Family AT2G23740 25.170 8.94e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma02g00116 SET 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00116 - - gmx:100795451 1757.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00116 02 1132150 1140854 Gma02g00116 02 1132150 1140854 ECH
Gma10g00121 10 1167250 1177384 Gma02g00116 02 1132150 1140854 GST
Gma19g02059 19 49510711 49516290 Gma02g00116 02 1132150 1140854 PCT
Gma03g02025 03 45831766 45836921 Gma02g00116 02 1132150 1140854 PCT
Gma02g00116 02 1132150 1140854 Gma19g02059 19 49510711 49516290 PCT
Gma02g00116 02 1132150 1140854 Gma03g02025 03 45831766 45836921 PCT