Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00088 ATGGCATCGGCGGGTGTAGCACCTGCTTCTGGGGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGTCTTCTGGATCACCCCAATGTTGTAACTTTGAAGCATTGcttcttttcaacaactgaaaaagacgagctttatcttaatttggtacttgagtatgttcctgagactgtccaccgagttatcaggcattacaacaaaatgaatcaaagaatgcctttgatatacgtgaaactctATTTTTACCAGATATGTAGAGCACTAGCTTATATTCACAACTGCATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACTCACCAGCTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACCGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGATATTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTCTGGAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACTCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGAGCTTAAAGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATGCAAGAAAGCAGTGTGCCTTGTTTGCGTCATAG 1149 0.3925 MASAGVAPASGEMEATVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGNGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYNKMNQRMPLIYVKLYFYQICRALAYIHNCIGVSHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRLPPEAVDLVSRLLQYSPNLRCTALEALAHPFFDELRDPNTRLPNGRYLPPLFNFRANELKGVPPEMLVKLIPSHARKQCALFAS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00088 382 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 12 380 - -
Gma02g00088 382 SMART serkin_6 46 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g00088 382 Gene3D Transferase(Phosphotransferase) domain 1 126 374 - -
Gma02g00088 382 ProSiteProfiles Protein kinase domain profile. 46 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g00088 382 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 12 380 - -
Gma02g00088 382 ProSitePatterns Protein kinases ATP-binding region signature. 52 76 IPR017441 GO:0005524
Gma02g00088 382 Pfam Protein kinase domain 46 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma02g00088 382 CDD STKc_GSK3 41 333 IPR039192 -
Gma02g00088 382 Gene3D Phosphorylase Kinase; domain 1 30 125 - -
Gma02g00088 382 SUPERFAMILY Protein kinase-like (PK-like) 45 357 IPR011009 -
Gma02g00088 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00088 Gma-Chr2 927658 932251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00088 52 338 Core Cell Cycle Gene Families AT1G76540 34.915 6.32e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gma02g00088 Pkinase 3.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00088 K00924 - gmx:100788046 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00088 02 927658 932251 Gma02g00088 02 927658 932251 ECH
Gma02g00088 02 927658 932251 Gma10g00096 10 943515 948035 ECH