Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00079 ATGAAAGGAAAAGTACTAGGTTCCGCAGTTTCTCTCATCCTAGTGGTGGGTGTGGTAATTGGCGTGGTTGCTGTAGTTCAAAGCCCAAAGGGCGTGAACAACAACAACAATGGAGGAGAATTGAAAACCAGCAACAGGGCCGTGACAGCGTTGTGCCAAGGCTCAGACGACCAGAAACTGTGCCACGAGGTTCTGTCATCTTCGAACAGCACAGACCCAAAGGAGTACATCGCAACCGTGGTGAGAACCTCGATGGACAGCGTGATCAAAGCGTTCAACATGAGCGACAGGCTGACGGTGGAACACGGCAACAGCAGCGCCGGAATGAAGATGGCTCTGGAGGATTGTAAGGACTTGTTGCAGTCCGCCATCCACGACCTAGAGGCCTCAGGCGTGTTGGTCAAAGAGAGCAGCCTACAGGACGTGCACCAGCGCACCGCCGAGCTCAAGAACTGGTTGGGAGCCGTTGTTGCCTACCAGCAATCGTGCCTGGACGGCTTCGACACCGACGGCGAGAAGAAGGTGCAGGAGCAGCTGCAATCTGGGAGCTTGGACAACGTTGGAAAACTCACTGGCTTGGCACTCGATGTCGTGTCAGGGATTTCACACATTCTCCAATCCTTGGACTTGAACCTTGCTCTCAAGCCCGCCTCTCGCCGCCTTCTGGAGGTGGACCAGGAAGGCTACCCCACTTGGGTCTCCGCTGCTGATCGCAAGCTCTTGGCTCAGCTCAACGACGGTGCAGTCTTGCCCCATGCTACTGTGGCTAAGGATGGCAGTGGTCAATTTACCACTGTTTTGGACGCTATTAACTCCTACCCTAAGAAACACCAAGGCAGATACATTATCTACGTTAAGGCTGGTATCTACGACGAGTACATCACCGTTGACAAGAAGAAGCCCAATCTTTTCATCTACGGTGATGGCCCCACAAATACCATCATCACTGGCCGCAAGAACTTTCACGAGGGTACCAAGACAATGAGAACCGCCACCTTCTCTACTGTTGCCGAGGATTTCATGGCGAAGTCAATTGCAtttgagaacaccgctggtgcagaaggacaccaagcagtggcacttcgcgtgcaagatggttatattccatggAACCCAATTGAACCAAACACACAGGATTGCTACTTCGCTGAGTTTGGCAACACTGGACCAGGTTCCGTTGCTCAAGCAAGAGCCAAGTTTGGCAAAGGTCTCATTAGCAAGCAGGAGGCTGCACAATTCACTGCTGAGCCTTGGCTCCAAGCTAGCACTTGGTTGCCTGCTGCTGGCGTTCCTTTCGATGCTAGCTTCACCAAAGCTTAA 1320 0.4985 MKGKVLGSAVSLILVVGVVIGVVAVVQSPKGVNNNNNGGELKTSNRAVTALCQGSDDQKLCHEVLSSSNSTDPKEYIATVVRTSMDSVIKAFNMSDRLTVEHGNSSAGMKMALEDCKDLLQSAIHDLEASGVLVKESSLQDVHQRTAELKNWLGAVVAYQQSCLDGFDTDGEKKVQEQLQSGSLDNVGKLTGLALDVVSGISHILQSLDLNLALKPASRRLLEVDQEGYPTWVSAADRKLLAQLNDGAVLPHATVAKDGSGQFTTVLDAINSYPKKHQGRYIIYVKAGIYDEYITVDKKKPNLFIYGDGPTNTIITGRKNFHEGTKTMRTATFSTVAEDFMAKSIAFENTAGAEGHQAVALRVQDGYIPWNPIEPNTQDCYFAEFGNTGPGSVAQARAKFGKGLISKQEAAQFTAEPWLQASTWLPAAGVPFDASFTKA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00079 439 Pfam Plant invertase/pectin methylesterase inhibitor 47 196 IPR006501 GO:0004857
Gma02g00079 439 Gene3D - 247 366 IPR012334 -
Gma02g00079 439 Pfam Pectinesterase 253 364 IPR000070 GO:0030599|GO:0042545
Gma02g00079 439 CDD PMEI-like_3 50 202 - -
Gma02g00079 439 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 202 IPR035513 -
Gma02g00079 439 PANTHER PECTINESTERASE 4 364 - -
Gma02g00079 439 PANTHER PECTINESTERASE 365 436 - -
Gma02g00079 439 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 199 IPR035513 -
Gma02g00079 439 TIGRFAM PME_inhib: pectinesterase inhibitor domain 41 178 IPR006501 GO:0004857
Gma02g00079 439 SUPERFAMILY Pectin lyase-like 252 433 IPR011050 -
Gma02g00079 439 Gene3D - 367 438 IPR012334 -
Gma02g00079 439 PANTHER PECTINESTERASE 4 364 - -
Gma02g00079 439 PANTHER PECTINESTERASE 365 436 - -
Gma02g00079 439 SMART PMEI_2 43 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00079 Gma-Chr2 865421 867342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00079 3 386 Carbohydrate Esterase AT3G62170 36.124 5.33e-65 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00079 K01051 - gmx:100808559 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01360 10 40319190 40321641 Gma02g00079 02 865421 867342 GST
Gma03g02058 03 46149285 46151073 Gma02g00079 02 865421 867342 PCT
Gma02g00079 02 865421 867342 Gma19g02097 19 49833167 49840592 PCT