Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00066 ATGGGCAAAGCCTCTAGTTCTTCCTCCTCTTCTATCTCCAGCTGCAGAAACCCTTCCAATTATTCAACTGCATCCTCTCTCACACACCAACATAGTGATCAAGACCACCTTCGCACAGATCTTAGGCTTGGACTAAGCATTTCCACTACTCATGATCAACATGTTGGCTCTTCTAGTTCAGGGGGGCACTGGCAACCGATGCAGCCACATCTAAGTAGTTTTTCACAAGCTACTGAAGTGAATCATTGCAGTGATCATACCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCGATTGGTAGAAAACTCAACCTGTTAGCTCATGATGGCTACCACGAGTTAGTAAAGACCCTTGAACAGATGTTTGACACTACCATTTTGTGGGGAACTGAAATGGACGGAGTGCAACCAGATAGGTGCcatgttctaacttatgaagatggagaaggagatttgattatggttggggatgtcccttgggagatgttcttatcagctgtaaagaggttgaagatcacaagggTGGAGACATTCGGGTGA 543 0.372 MGKASSSSSSSISSCRNPSNYSTASSLTHQHSDQDHLRTDLRLGLSISTTHDQHVGSSSSGGHWQPMQPHLSSFSQATEVNHCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTILWGTEMDGVQPDRCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVETFG 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00066 180 Gene3D - 82 179 - -
Gma02g00066 180 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Gma02g00066 180 MobiDBLite consensus disorder prediction 1 35 - -
Gma02g00066 180 MobiDBLite consensus disorder prediction 1 30 - -
Gma02g00066 180 PANTHER AUXIN-INDUCED PROTEIN 2 180 - -
Gma02g00066 180 Pfam AUX/IAA family 79 175 IPR033389 -
Gma02g00066 180 SUPERFAMILY CAD & PB1 domains 85 174 - -
Gma02g00066 180 ProSiteProfiles PB1 domain profile. 88 178 IPR000270 GO:0005515
Gma02g00066 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 180 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00066 Gma-Chr2 782150 783180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00066 92 173 B3 DNA Binding Superfamily AT4G23980 38.554 5.61e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gma02g00066 AUX_IAA 3.4e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00066 K14484 - gmx:100784866 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01374 10 40547483 40548893 Gma02g00066 02 782150 783180 GST
Gma19g02108 19 49945528 49946436 Gma02g00066 02 782150 783180 PCT
Gma03g02071 03 46261199 46263109 Gma02g00066 02 782150 783180 PCT
Gma02g00066 02 782150 783180 Gma19g02108 19 49945528 49946436 PCT
Gma02g00066 02 782150 783180 Gma03g02071 03 46261199 46263109 PCT