Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00062 ATGGGAAGGCACTCTTGTTGTTACAAGCAGAAGCTTAGGAAGGGTCTTTGGTCTCCTGAGGAGGATGAAAAACTTCTGAGGCATATTACTAAGTATGGTCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTCTGCAAAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATCAATTATTTAAGGCCTGATTTAAAAAGAGGAACATTCTCACAAGAAGAAGAAAACCTTATCATTGAACTTCATGCAGTATTAGGGAACAGGTGGTCTCAAATTGCGGCACAGTTGCCGGGGAGAACAGACAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAGAAACTGAGGCAAAAGGGAATAGACCCTGTCACACATAAACCACTGTCTGAGGTTGAGAATGGAGAGAAAGCAGCAGAAGTGTCTAATGAACTGAACCTCCTGAAATCAGAGAGCTCCAAGTCTGATTCAGCATCCTATGAGCAGAGAACATCAATTTCTCCAAAAGCCTATGCACCTGAGATGGATGGTTCCTGCAGCTCCAAGATTGAAATCAATTTTGTAACCAACAACAACTGTTACAACAAAGACTTGTTCCTAGACAGGTTTATGAGTAGTAGCCGCCAAGAGAGTTACACCACTAGTTGCCAGCCCTCAGATTTGATGGGGAATTTTCCAATTCAGATGAGTTATGCAACCAATGATCAGTGTCTCCCTAATGATTCAAACTCTAGTCATTGGTTCAGCCAAACTGGAAGGTCTTTTGATATGAACACTGAGTTTCCTTTCAATGCCGCTGTCACTTCTATCAATCCTACACCTACAACCAACTTGTTTCTTCCTAATAATTCTTTTTGCTACAAGCCTTCACTTGCTGTTCCCTCTGACAATGTTTCCATACCCTATGGATCCCATTACTGGGAAGCCAGTGCCTCCAACAACAGCAATAGTAGCACAGAATTGAGAAGTAGCAGCCCCTTGAACATCTTTTCTTCTTGGGGATTGGCAGATTGTGGCACCTCTACTACTAAAGAGGCACAAATTCATATGATGGAGAATCATAATACAGAAGAAGCTAAGTGGGATGAGTACCTTCATAACCCTATCTCAATGCTGGCTTCTTCTGTACAAAACCAAGCTCCTGAGTCTCTATGCAATGATATAAAAACATCCATGCATTTGGTACCTGATACTTTAGGGGCTATGCTACCTCATAACCATACCAAGCAGCAAGAACAGTCTCAAACTTCTAGTTTCTTTTCCAAGGACATCCAGAAGCTCAGGGCAGCCTTTGGACACATGTAA 1305 0.4253 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENGEKAAEVSNELNLLKSESSKSDSASYEQRTSISPKAYAPEMDGSCSSKIEINFVTNNNCYNKDLFLDRFMSSSRQESYTTSCQPSDLMGNFPIQMSYATNDQCLPNDSNSSHWFSQTGRSFDMNTEFPFNAAVTSINPTPTTNLFLPNNSFCYKPSLAVPSDNVSIPYGSHYWEASASNNSNSSTELRSSSPLNIFSSWGLADCGTSTTKEAQIHMMENHNTEEAKWDEYLHNPISMLASSVQNQAPESLCNDIKTSMHLVPDTLGAMLPHNHTKQQEQSQTSSFFSKDIQKLRAAFGHM 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00062 434 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma02g00062 434 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gma02g00062 434 CDD SANT 17 61 IPR001005 -
Gma02g00062 434 SMART sant 13 63 IPR001005 -
Gma02g00062 434 SMART sant 66 114 IPR001005 -
Gma02g00062 434 Gene3D - 68 142 - -
Gma02g00062 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma02g00062 434 PANTHER MYB DOMAIN PROTEIN 55 1 428 - -
Gma02g00062 434 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma02g00062 434 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma02g00062 434 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma02g00062 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma02g00062 434 CDD SANT 69 109 IPR001005 -
Gma02g00062 434 Gene3D - 11 67 - -
Gma02g00062 434 PANTHER HOMEODOMAIN-RELATED 1 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00062 Gma-Chr2 733767 735765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00062 1 433 MYB Transcription Factor Family AT1G09540 42.431 5.19e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma02g00062 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00062 K09422 - gmx:100782199 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01379 10 40636448 40638184 Gma02g00062 02 733767 735765 GST
Gma19g02111 19 50002787 50004533 Gma02g00062 02 733767 735765 PCT
Gma03g02074 03 46300639 46302596 Gma02g00062 02 733767 735765 PCT
Gma02g00062 02 733767 735765 Gma19g02111 19 50002787 50004533 PCT
Gma02g00062 02 733767 735765 Gma03g02074 03 46300639 46302596 PCT