Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00055 ATGGAACGTGGGGTTCTTGATGGTATCATCAGTCGGCTGCTTCAAGTCAGAGTGAGACCTGGGAAACAGGTTCAGCTTTCAGAGGCAGAAATCAGGCAGCTTTGTGCGGTTTCCAGAGATATCTTTTTGAAGCAGCCCAATCTGTTGGAACTGGAACCACCAATTAAGATATGTGGAGACATCCATGGTCAATATTCTGACCTTCTGAGACTTTTTGAGCATGGTGGATTGCCTCCTCGCTCCAACTACTTATTCTTAGGCGATTATGTCGACCGTGGAAAGCAAAGCCTTGAGACAATATGTCTTCTTTTGGCATACAAGATAAAGTACCCTGAGAACTTCTTCCTCCTTAGAGGCAATCATGAATGTGCTTCCATAAACCGCGTCTACGGCTTCTACGACGAATGTAAACGGCGATTCAACGTCAGGCTATGGAAAATATTTGCAGATTGCTTCAACTGCATGCCTGTGGCAGCTATCATTGAGGAAAAGATTTTCTGTATGCATGGTGGACTCTCTCCAGAATTGCACAATCTAAGTCAGATAAGTAGTTTGCCGCGTCCAACCGAAGTACCCGAGAGTGGTCTACTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGACATTGAGGGTTGGGGAGACAATGAGCGCGGAGTTTCTTATACTTTTGGTGCTAGCAGGGTGACAGAATTTCTTGGAAAGCATGATCTTGACCTGATTTGTAGAGCACACCAGGTTGTTGAAGATGGATATGAATTTTTTTCCAATAGACAACTTGTGACTATCTTTTCTGCACCTAACTACTGTGGAGAATTTGACAATGCTGGAGCAATGATGACTGTTGATGAGACACTTATGTGCTCTTTTCAGATACTAAGGCCTGTGGAACACAGAAAGCCTAAGTTTGGTTTTGGGAGCAAAACTACATTCAAGGCAGTTCTTGATGCTGCTAGAGTATGA 960 0.4375 MERGVLDGIISRLLQVRVRPGKQVQLSEAEIRQLCAVSRDIFLKQPNLLELEPPIKICGDIHGQYSDLLRLFEHGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRVYGFYDECKRRFNVRLWKIFADCFNCMPVAAIIEEKIFCMHGGLSPELHNLSQISSLPRPTEVPESGLLCDLLWSDPSKDIEGWGDNERGVSYTFGASRVTEFLGKHDLDLICRAHQVVEDGYEFFSNRQLVTIFSAPNYCGEFDNAGAMMTVDETLMCSFQILRPVEHRKPKFGFGSKTTFKAVLDAARV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00055 319 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Gma02g00055 319 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Gma02g00055 319 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 317 - -
Gma02g00055 319 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 317 - -
Gma02g00055 319 SMART pp2a_7 26 296 IPR006186 GO:0016787
Gma02g00055 319 Gene3D - 2 303 IPR029052 -
Gma02g00055 319 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Gma02g00055 319 CDD MPP_PP1_PPKL 5 294 - -
Gma02g00055 319 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Gma02g00055 319 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Gma02g00055 319 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Gma02g00055 319 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Gma02g00055 319 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Gma02g00055 319 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Gma02g00055 319 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Gma02g00055 319 SUPERFAMILY Metallo-dependent phosphatases 21 299 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00055 Gma-Chr2 669730 675413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00055 55 242 Calmodulin-binding Proteins AT5G63870 31.839 1.12e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00055 K06269 - gmx:100780047 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00067 10 682196 687660 Gma02g00055 02 669730 675413 GST