Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00052 ATGGTTAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGACCCCAGAGGAAGATCAAATCCTCATGTCATACATCCAAAAACATGGCCATGGAAATTGGCGTGCCCTCCCAAAGCTTGCAGGGTTATTAAGGTGTGGCAAGAGCTGCAGGCTAAGGTGGATTAACTATTTAAGGCCAGATATCAAGAGAGGAAATTTTTCAAGCGAAGAAGAGGAAATTATCATTAAGATGCATGAGTTGCTGGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCAGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCCACTTGAAGAAGAGGCTACTGAATTCAGAAATCCAAAAAAGGGTTTCCAAGCCAAGAATCAAACGATCTGATTCCAATTCCAGCACACTAACTCAATTAGAACCTACATCATCAGCATGCACTACTTCTTTAAGTGACTTTTCATCATTTAGTGAAGGGACTAAAAACATGGACAACATGATCAAGAGTGAAGACATAGAGTCTGTGGAGACAATAATGCCTCCAATTGATGAAAGCTTTTGGTCAGAGGCAACAGTGGATTATGAAAGCTCCACCATGATGACATCAAATTCTTGGACAATTTCAAATGAATTAGCACCCCCTCAATACCAATTTAATTCAGTGGAAAGCTTCCAACAACGAAGTGTTGATTATAATGGTTCAAACTATGATGATGGCATGGATTTCTGGTATGACATATTCATCAAATCAGGGGAGTCAATCGAATTGCCAGAGTTCTGA 792 0.404 MVRAPCCEKMGLKKGPWTPEEDQILMSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFSSEEEEIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLNSEIQKRVSKPRIKRSDSNSSTLTQLEPTSSACTTSLSDFSSFSEGTKNMDNMIKSEDIESVETIMPPIDESFWSEATVDYESSTMMTSNSWTISNELAPPQYQFNSVESFQQRSVDYNGSNYDDGMDFWYDIFIKSGESIELPEF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00052 263 CDD SANT 69 112 IPR001005 -
Gma02g00052 263 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma02g00052 263 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma02g00052 263 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 254 - -
Gma02g00052 263 CDD SANT 16 61 IPR001005 -
Gma02g00052 263 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gma02g00052 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Gma02g00052 263 Gene3D - 13 66 - -
Gma02g00052 263 SMART sant 13 63 IPR001005 -
Gma02g00052 263 SMART sant 66 114 IPR001005 -
Gma02g00052 263 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma02g00052 263 MobiDBLite consensus disorder prediction 132 154 - -
Gma02g00052 263 Gene3D - 69 143 - -
Gma02g00052 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma02g00052 263 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma02g00052 263 MobiDBLite consensus disorder prediction 124 154 - -
Gma02g00052 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00052 Gma-Chr2 619350 621446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00052 1 263 MYB Transcription Factor Family AT1G06180 49.254 2.17e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma02g00052 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00052 K09422 - gmx:100794205 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00052 02 619350 621446 Gma02g00052 02 619350 621446 ECH
Gma10g00065 10 654527 656691 Gma02g00052 02 619350 621446 GST
Gma19g01555 19 44934829 44937065 Gma02g00052 02 619350 621446 PCT
Gma03g01500 03 41249472 41251551 Gma02g00052 02 619350 621446 PCT