Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00049 ATGGCAGATCTTGCTAGCTTTGGGAGTCATGAGCGTGATGTTGAGCAAGCATTCATTACTTTAAAAAAGGGCACTCAGTTAGTAAAGTATAGTCGAAAAGGGAAGCCAAAGCTTTGTACATTCAGGCTCTCATCGGATGAAACGAAACTGATTTGGATATCTCATGGAAGGGAAAAGAATCTAAAATTGTCTTCTGTTTCACACATCATCCCAGGACAGAGAACAGCTGTCTTTAGAAGATACTTGCGTCCTGAAAAGGATTATCTGTCATTTTCACTTATTTATAAAAAGGGGGAACGATCACTTGATCTGATTTGCAAGGACCAAGCTGAGGTAGAGGTATGGTTTTCAAGCCTTAAGGCATTAATTTCCCGTGGAGAGCGTATTAGGCGTGGAAAAAGTGATTTATCCAATGAAAGTGTTGACTTAATTCCAAATGATCGTCCTAATGCTGGAACACTAGAGTTTGCATCAAGCATTGCCCGTGGCAGGTTTTCTTTTGAATCAGTATCTCATGAATCTACATCATCTTGCTCTAGATCAGATACAAATATGCCAGTAAGGACAAGTTGTGGAGATGGTTCTCGTGTTAGTGTATCAAGTGTTAGCCACTCAAGTAGTGTAGGATCAGGACTAGATGACATAGAATCTCTAGGTGATGTTTATATATGGGGAGAGGTTTGGGTAGATGGCAATTCATCTGATGGATTGGGGAGTCTAGCCTCTTGTAAGACCGATGTGCTGACTCCTAAACCATTGGAGTCTGATGTTGTTCTTGATGTCCATCAGATTGGGCCTGGTGATCGTCACATTGCTCTAGTTACAAGGCAGGGAGAGGTTTTTACTTGGGGAGAGGACTCTGGTGGAAGACTTGGTCATGGATTTGAAAAAGATTTTGGTAGACCTCATCTTGTGGAGTCCCTGGCAATTACCAATGTGACTTTTGTTGCATGTGGCGAGTATCATTCATGTGCTGTGTCATCATCTGGTGACCTATTCACCTGGGGTGATGGTACACATGGTGCAGGACTTCTTGGTCATGGCACTGATGTTAGCTACTGGATACCAAAAAGGGTTAGTGGTCCTTTAGAGGGACTTCAGGTTGTATCTGTAGCATGTGGAACATGGCATTCAGCATTAGCAACCTCCAATGGGAAGTTGTTTACCATTGGTGATGGAAGATTTGGTGTATTGGGCCATGGAGACCGAGATAGTGTGGCATATCCAAAGGAGGTACAATTATTGAGTGGACATAAGGCTATTAAGGTTGCATGTGGAGTGTGGCACTCAGCAGCCATTATAGAGGTTATGGGTCCTTCTGGTTCAAACACTTCAGCCAAGAGGCTCTTCACATGGGGTGATGGCGACCAATATCGTTTGGGTCATGTTAACAAGGAAACTTACCTTGAACCAACTTGTGTAGCTGCAGTTGCTGAGTATAATTTTCACCAGGTTGCATGTGGGTACACTATGACTGTTGCACTCACTACATCTGGTCATGTTTTTACTATGGGAGGCACAGCATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTGCCAATTCTAGTCCGAGGTAAGTTAGTAGGAGAGTTTGTGGAGGAAATATCATGTGGGGCCAATCATGTTGCTGTGTTGACTTCAAGAAGTGAATTATATACTTGGGGGAGAGGTGCCAATGGAAGACTAGGACATGGAGACACAGATGATCAGAAATCTCCAACACTGGTGGAAGCCTTGAAAGACAGGCATATTAAGAACATCTCATGTGGTTCGACCTTTACATCTTGCATATGCCTACATAAATGGGTTTCTGGAGTTGACCAATCTGTTTGCTCTGATTGTCGACAACCATTTGGTTTTACCCGAAAAAGGCGTAATTGCTATCATTGTGGATTGGTGTATTGCCATCCTTGTAGTTCAAAAAAGGCTTCAAAAGCAGCACTGGCTCCAACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATGCTAAGCTAAAAGGTTCTGATAGTGCTTCCAATTTTAATAGGGACATTAGTCGTCCATCTAGTTCCATATATGGAAGGGAAAGTTTTCACCGGGGAGAGGTAAGGTCTTCAAGAGTTCTCTTGCCTCCTACCATAGAACCGGTTAAATACCTTGAGATTAGGACTAATAAGCCTGGAAGTACACATGACTCCATAGTCCGAGCTGCTCAAGTTCCTACGACTTTACAATTGAAAGATGTTTCATTTCCAATTTCATTGAGTTCTGTGCAGAATGTTTACAAACCCGTTATACAGCCAAGTCAACCTCCAACTCCACCAACATCAGCTACTCCAATACCCATGTCACCATATGCTAGAAGACCACCAAGCCCACCGCGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTATTGATAATTTAAGGAAGAAAAATGATCATTTGAATCAAGAAGTTACAAAATGGCAAAACAAAAATCAAAATTTGGAGCAGAAGAGTGACATGCAAGATATGAAGATTCAGGAGCTTCAGAAAAATATTGAAGAAGCCATGTCACAATTTGGAGAGGAATCTTCTAAGCTTAGAGAAGCAAAGGAATTTATTAAGTCCTTGGCAGATAAGTTGAGGGAAGTGACTGAGAAGTTGCCACCTGAGATTCCTGACAAAGAGACCTTGAGAACCATGCATGCTCAAGCTGAAGAATTTCTACATGAAGAAAAAGATTTTGAATCTTCTTCCTCCCCACAGAGCCTTGAGTCTGAGCAACAAAGTGCACCTGATGTACCTGCCTCAGATAGTGACTCTTCAAAACTCCAACAGCAAAGAGTGGAAGGAAATGATGATGCTTCTGGGGTTGTTCCATCTATAGATGGAGAAAATATTCTTGAAGAAAGCAGCAACTCATCTGTATCTAGTCTAGTAGTGATTCCACCAAGCTCAGGAAATGGTTCAAAATTGCATGACTCTGGTATACCTGTGAAAGAAGGAGAAAAATCAGTCATTGAACAATTTGAGCATGGTGTTTATGGCACACTCGTAGTACTACCTAGTGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGAAGATTCAACGAGCAGCAAGCAGAAGAATGGTGGAACCAGAACAAAGATAAGGTGCTTAGTAAATACAGTCCACCAGCCGCAAAAAATTCAAAAACTGGATCATCTATTACCCCTCCACATGCTGAAGAGAATAGTGAGGCTTTACCTTCTTCCTAA 3237 0.4198 MADLASFGSHERDVEQAFITLKKGTQLVKYSRKGKPKLCTFRLSSDETKLIWISHGREKNLKLSSVSHIIPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEVEVWFSSLKALISRGERIRRGKSDLSNESVDLIPNDRPNAGTLEFASSIARGRFSFESVSHESTSSCSRSDTNMPVRTSCGDGSRVSVSSVSHSSSVGSGLDDIESLGDVYIWGEVWVDGNSSDGLGSLASCKTDVLTPKPLESDVVLDVHQIGPGDRHIALVTRQGEVFTWGEDSGGRLGHGFEKDFGRPHLVESLAITNVTFVACGEYHSCAVSSSGDLFTWGDGTHGAGLLGHGTDVSYWIPKRVSGPLEGLQVVSVACGTWHSALATSNGKLFTIGDGRFGVLGHGDRDSVAYPKEVQLLSGHKAIKVACGVWHSAAIIEVMGPSGSNTSAKRLFTWGDGDQYRLGHVNKETYLEPTCVAAVAEYNFHQVACGYTMTVALTTSGHVFTMGGTAYGQLGNPNSDGKVPILVRGKLVGEFVEEISCGANHVAVLTSRSELYTWGRGANGRLGHGDTDDQKSPTLVEALKDRHIKNISCGSTFTSCICLHKWVSGVDQSVCSDCRQPFGFTRKRRNCYHCGLVYCHPCSSKKASKAALAPTPSKPHRVCDACYAKLKGSDSASNFNRDISRPSSSIYGRESFHRGEVRSSRVLLPPTIEPVKYLEIRTNKPGSTHDSIVRAAQVPTTLQLKDVSFPISLSSVQNVYKPVIQPSQPPTPPTSATPIPMSPYARRPPSPPRSTSPGFSRSLIDNLRKKNDHLNQEVTKWQNKNQNLEQKSDMQDMKIQELQKNIEEAMSQFGEESSKLREAKEFIKSLADKLREVTEKLPPEIPDKETLRTMHAQAEEFLHEEKDFESSSSPQSLESEQQSAPDVPASDSDSSKLQQQRVEGNDDASGVVPSIDGENILEESSNSSVSSLVVIPPSSGNGSKLHDSGIPVKEGEKSVIEQFEHGVYGTLVVLPSGYKVFKRIRFSKRRFNEQQAEEWWNQNKDKVLSKYSPPAAKNSKTGSSITPPHAEENSEALPSS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00049 1078 MobiDBLite consensus disorder prediction 957 983 - -
Gma02g00049 1078 MobiDBLite consensus disorder prediction 763 793 - -
Gma02g00049 1078 Gene3D - 342 442 IPR009091 -
Gma02g00049 1078 Gene3D - 156 341 IPR009091 -
Gma02g00049 1078 ProSiteProfiles BRX domain profile. 995 1050 IPR013591 -
Gma02g00049 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 385 436 IPR000408 -
Gma02g00049 1078 PRINTS Chromosome condensation regulator RCC1 signature 280 296 IPR000408 -
Gma02g00049 1078 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Gma02g00049 1078 PRINTS Chromosome condensation regulator RCC1 signature 371 387 IPR000408 -
Gma02g00049 1078 PRINTS Chromosome condensation regulator RCC1 signature 387 401 IPR000408 -
Gma02g00049 1078 PRINTS Chromosome condensation regulator RCC1 signature 488 506 IPR000408 -
Gma02g00049 1078 PRINTS Chromosome condensation regulator RCC1 signature 546 567 IPR000408 -
Gma02g00049 1078 SMART fyve_4 601 670 IPR000306 GO:0046872
Gma02g00049 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 278 326 IPR000408 -
Gma02g00049 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 384 433 IPR000408 -
Gma02g00049 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 552 599 IPR000408 -
Gma02g00049 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 448 495 IPR000408 -
Gma02g00049 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 329 380 IPR000408 -
Gma02g00049 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 498 547 IPR000408 -
Gma02g00049 1078 SUPERFAMILY RCC1/BLIP-II 224 604 IPR009091 -
Gma02g00049 1078 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 12 1057 - -
Gma02g00049 1078 Pfam Transcription factor BRX N-terminal domain 853 884 IPR027988 -
Gma02g00049 1078 MobiDBLite consensus disorder prediction 910 943 - -
Gma02g00049 1078 CDD PH_PLC_plant-like 12 124 - -
Gma02g00049 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 551 602 IPR000408 -
Gma02g00049 1078 SUPERFAMILY PH domain-like 13 123 - -
Gma02g00049 1078 MobiDBLite consensus disorder prediction 1043 1078 - -
Gma02g00049 1078 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 423 433 IPR000408 -
Gma02g00049 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 447 498 IPR000408 -
Gma02g00049 1078 SUPERFAMILY FYVE/PHD zinc finger 603 673 IPR011011 -
Gma02g00049 1078 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Gma02g00049 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 550 IPR000408 -
Gma02g00049 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 679 IPR013083 -
Gma02g00049 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 384 IPR000408 -
Gma02g00049 1078 CDD FYVE_like_SF 613 665 - -
Gma02g00049 1078 MobiDBLite consensus disorder prediction 902 988 - -
Gma02g00049 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 278 329 IPR000408 -
Gma02g00049 1078 Pfam FYVE zinc finger 603 668 IPR000306 GO:0046872
Gma02g00049 1078 Gene3D - 443 609 IPR009091 -
Gma02g00049 1078 Coils Coil 802 878 - -
Gma02g00049 1078 Pfam Transcription factor regulating root and shoot growth via Pin3 995 1049 IPR013591 -
Gma02g00049 1078 Gene3D - 13 131 IPR011993 -
Gma02g00049 1078 MobiDBLite consensus disorder prediction 762 800 - -
Gma02g00049 1078 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 12 1057 - -
Gma02g00049 1078 MobiDBLite consensus disorder prediction 1040 1078 - -
Gma02g00049 1078 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 607 669 IPR017455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00049 Gma-Chr2 598199 605604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00049 992 1050 Major Intrinsic Protein MIP AT1G31880 42.373 5.30e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00049 - - gmx:100778984 2032.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00062 10 629381 636885 Gma02g00049 02 598199 605604 GST