Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00025 ATGTCACAAAATTTCATCCCTGCAAGCTGCTACCGCAATATGCTCATTGTGTATTTGAATAGCTCATATGCTTCCTCCCTACTGGATGTGAAACAGATATTAATGTTTACTTGGATGGCCTTGAAGCTTATGGCATGTGCAGCAACTTTCTACATCATTAAAGTGTATACTGTACTTGACAAGAAACTTGAGCAAGTTGATTCTACTGTGGCTTTTTGGTCTCGGGAAAGATTTGAAGCTTTTTCATCTATTTTTATTTTATGGGCCCGGCCCAAACCTGACCCGGCAACCCAATCTTTTAAATCGAGTTCCGAAGCCATATTCTCAGTCTCTAGGGTTTTTGATCGTTGTTGTTCTAAAGCACTCATCCACACATTCTCCGTCGCCACGACAACAATGGCTCCAAAGAAAGGTGCGAAAGGTGGAGTTGTAGCAGCAAAGAAGAAGGTTCAGGAGAAGGTAACGAACCCTTTGTTCGAGAAGCGTCCGAAGCAGTTCGGGATCGGAGGCGCGCTGCCGCCGAAGCGGGACCTGACGCGCTTCGTGAAGTGGCCGAAGAACGTCCAAATCCAACGCAAGAAGCGCATCCTCAAGCAGAGGCTCAAGGTCCCTCCGGCTCTCAACCAGTTCACCAAAACCCTCGACAAAAATCTCGCAACAAATCTTTTTAAAATGCTGCTGAAGTACAGGCCGGAGGACAAGGCGGAGAAGAAGGAGAGGCTGTTGAAGAGGGCTCAGGCTGAGGCTGATGGGAAACCTGTTGAGGCCAAGAAGCCTATTGTTGTCAAATATGGTCTCAACCACGTTACCTACCTTATTGAGCAGAACAAGGCACAACTGGTTGTGATTGCTCATGACGTGGACCCAATTGAGCTGGTAGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAAGCACGCTTGGGAACAATTGTCCACAAGAAAACTGCTTCAGTTTTGTGCTTGACAACTGTCAAGAATGAAGACAAGATGGAGTTCAGTAGAATCCTAGAAGCTATTAAGGCCAACTTCAATGACAAGTACGATGAATACAGAAAGAAGTGGGGTGGTGGAATCATGGGTTCGAAGTCCCAAGCCAAGACCAGGGCCAAGGAGAAGCTCCTTGCCAAGGAAGCAGCCCAAAGAATGAACTAG 1179 0.469 MSQNFIPASCYRNMLIVYLNSSYASSLLDVKQILMFTWMALKLMACAATFYIIKVYTVLDKKLEQVDSTVAFWSRERFEAFSSIFILWARPKPDPATQSFKSSSEAIFSVSRVFDRCCSKALIHTFSVATTTMAPKKGAKGGVVAAKKKVQEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAEADGKPVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTIVHKKTASVLCLTTVKNEDKMEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00025 392 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 252 340 IPR004038 -
Gma02g00025 392 PRINTS Ribosomal protein L7A/RS6 family signature 297 307 IPR018492 -
Gma02g00025 392 PRINTS Ribosomal protein L7A/RS6 family signature 262 276 IPR018492 -
Gma02g00025 392 PRINTS Ribosomal protein L7A/RS6 family signature 307 321 IPR018492 -
Gma02g00025 392 PRINTS Ribosomal protein L7A/RS6 family signature 281 294 IPR018492 -
Gma02g00025 392 ProSitePatterns Ribosomal protein L7Ae signature. 300 317 IPR004037 GO:0042254|GO:1990904
Gma02g00025 392 Gene3D - 184 367 IPR029064 -
Gma02g00025 392 PANTHER BNAA03G47020D PROTEIN 93 390 - -
Gma02g00025 392 PRINTS Ribosomal protein L7A family signature 319 343 IPR001921 -
Gma02g00025 392 PRINTS Ribosomal protein L7A family signature 163 180 IPR001921 -
Gma02g00025 392 PRINTS Ribosomal protein L7A family signature 224 237 IPR001921 -
Gma02g00025 392 PRINTS Ribosomal protein L7A family signature 180 197 IPR001921 -
Gma02g00025 392 PRINTS Ribosomal protein L7A family signature 200 219 IPR001921 -
Gma02g00025 392 PRINTS Ribosomal protein L7A family signature 258 278 IPR001921 -
Gma02g00025 392 PRINTS Ribosomal protein L7A family signature 351 371 IPR001921 -
Gma02g00025 392 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 93 390 - -
Gma02g00025 392 SUPERFAMILY L30e-like 222 363 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00025 Gma-Chr2 334114 338646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00025 133 392 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.000 1.39e-165 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00025 K02936 - gmx:100797399 479.559