Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00014 ATGGTTGGATTGGAACTCATACCCATAGGTACAATATTGACTGTTCTAAACAGCCAGATTGTGAAAACAGCTAATGCAGCAATCGATGTTGTTATTGATAAAGAAAGTTTCAAGGTCCTCTCAAAACACCTGCTTGATATTGCCCCAGTCCTAAAGGAATTGCAGCTTCAGGAATTGAATGAGTCTGAAGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATATCAAAAAGGCGAATAATTTGGTTGAGAAGTACAGGAACCGTGGCCGTTTCTACCTGCTGTTGAGGTGCAGATACATAGTCAAGGAAGTTGAACAAGTCACAAGAGACATTGGAAGGTCTCTGGCTGCACTGTCCATTGCAAACACTGAAGTCCTATCAAGAATTTCTGATCAGGTCAACAGGTTACAGAGTGAAATGCAAACGGTGGAGTTTGAGGCTTCACAATCTCAGCTTCAAATTGTTGACAAGTTGAACCATGGAATTAGGGAGCAGAAACTCGATCAGGCTTTTGCAAATGACGTGCTTGAGGAAATAGGAAGGGCAGTTGGGGTGCCGGTGGAGCCTTCAGAGGTAAGCAAAGAGCTAGCCAGCATTAGGAAGGAAATGGAAGAAGCAGCCACCAGGAAAGAAAGAGCTGAGTTTATTTTTTTGGAGCAGATCATTGAGCTACTATCTCGAGCTGATGCTGCAAGGGATTATGAAGAAGTTAAGAAGCAATACTTTAGAAGGGTTCAGGTAATTGAGAGATATGATTCAAGGGAAAAATATATCCGACCACTTAATTCTTTCCTTTGTCCCATAACTGGAGCTGTTATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCCGCCATTGAAGCTTGGTTTGATGATGGAAACAGGATTGACCCAGAAACAAAAGAGGTTCTTGAAGATACTACCTTGAGATCCAATGTTCGATTAAGAGAATCCATAGAAGAGTGGAGAGAAGTCAATTACTGCTTTGGAATAAGGTCTATCAAGGAAAGCCTATTATCCAATTCTGACTTATTAGTGCAAGAATCTCTGAGCCAAATTCAGGCTCTCATTAGAGAGAATTCCATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTATTATCTCTATCCTTGGGGAATCTGATTCCACAGATGCCAAGATGAAGATCTTGATTACTTTGAAGGATTCTGTACAGGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGTTGGTATCACATTATTTCCTGCTTAGGGAGTGACTCTAGAATTTCAAAGGAAGCAATTGATTTGCTATATGAGTTACTTCAAGACCGATCTGGTTGGAATAAAAGCTTCTGCAAAAAACTCTCTGATCATCCTAGTGCAGTTTCTTACCTTGTTACTCTTCTAAAGGGTCCTGTAAGCAATTCAGCTGGGGTTTCAGAAAAGATTTTGATGGAGCTTTCTGAGATAGACGAGGAAAACATTTCAGCTGCTGCAAAGTTTGGCTGGTACAAACCTCTTACTGATCGCATGATTCAAGGATCGGAGTCTTCACGAATGTCAATGGCGAGAGCCATAGTTAATTTGGAGTTGAAAGATTTGAACTTGAAACTCCTTGGCGAGCAAGGAGTTATACTTCCTTTGCTAGAAATGCTATCTGGCAGCATTGAATCTAAAGAACTGTCACTGTCATCCCTGGTTAAACTAGCAAAATTGCATGCCAATAAGGGGATTATTGCAGCATCTGGAGGTGTGCCTCTTGTTTTAGATTTGATGTTCTCTTGCAGGATGCGGCCATTCATTACCATTAAATGTTGTGAAATCCTTGAGAAGCTAGCTTCAGATGATGATGGAATTGATTTCTTAGTTGATGGAAAAGGAAATCAACTTGAGTTAGAAAACATCATCACCAATTTGCTAGCTCTAACTCAGGGTCCAAACTCAGCTCACTACCGAAAGCCTGCATTACGTGCTCTTCTTGGAATTTGTAAGTTTGAGACTGGTTTAGTGAAGAAGGCAGTTCTGGCAGCCAATGGGATATCTCTAATCCTCCCCATTCTTGATGATTCTGACTCAGAAATCAGGGAAACTGCCATAAATATTCTGTTTCTTTTCTCCCAACATGAACCACAAGGACTAGTTGAATACCTCTTCAGTCCAAGAAGACTACAAGCTTTAGTTGGGTTTCTTGAGAATGACGACAATGATGATGTGCAAATGGCTGCTGCTGGTTTACTAGCCAACCTTCCAAAATCAGAACGGGAACTCACTATGGAGTTGATTGACCTGGGAGGCCTTGATGCAATCCTAAGCATTTTAAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCCCTCTTCAGATTCACAGACCCCACAAATATCGAGTCACAGCATGATTTGGTTAAACGAGGACTATATCCTTTGCTTGTAAATTTTCTCAACACGGGTTCAGTAACAGCAAAGGCAAGAGCAGCAGCATTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACAGCTGTTTCCAAATCAACCGGTTGCACTCGTTGGTGGTGTTTTAGACCATCGAAAGTCCCTTTATGTTCAGCACATGGGAGTGTATGCAGTGTGAGTTCCACATTTTGTCTGTTGGAAGCAAATGCTTTGCCCGGCTTGATAAGGCTGTTACATGGGGAGGTTCATGCAACTGCTTATGAAGCTATACAGACTCTTTCCACATTGGTTTTGGAAGACTTTCCCCAAAGGGGAGCTCGTGTGTTGCATGAGTCAAATGCAATGAGACCCTTATTGGAAATTTTGAATTGGGGAACTGATTCTCTCAAATCAGAAGCTATAGGACTCTTGGAGAAGGTGTTTGTGTCAAAGGAAATGGTCGAATACTATGGAACAAGGGCTAGGTTAAGTCTACTTGGTCTGACTGGCATCACTGTATATGGGGATGGCCATCTAAGGAGAAAGGCTGCCAGGGTACTGTCATTGCTTGAACGCTATTCAAAGTCGTCATCATCTGCATTCTCTGGAGTTCAGGAGTGA 3057 0.419 MVGLELIPIGTILTVLNSQIVKTANAAIDVVIDKESFKVLSKHLLDIAPVLKELQLQELNESEAARVALESLESDIKKANNLVEKYRNRGRFYLLLRCRYIVKEVEQVTRDIGRSLAALSIANTEVLSRISDQVNRLQSEMQTVEFEASQSQLQIVDKLNHGIREQKLDQAFANDVLEEIGRAVGVPVEPSEVSKELASIRKEMEEAATRKERAEFIFLEQIIELLSRADAARDYEEVKKQYFRRVQVIERYDSREKYIRPLNSFLCPITGAVMVDPVSLCTGTTCERSAIEAWFDDGNRIDPETKEVLEDTTLRSNVRLRESIEEWREVNYCFGIRSIKESLLSNSDLLVQESLSQIQALIRENSINKDWISIGELTDIIISILGESDSTDAKMKILITLKDSVQGHARNKEKVVESQGWYHIISCLGSDSRISKEAIDLLYELLQDRSGWNKSFCKKLSDHPSAVSYLVTLLKGPVSNSAGVSEKILMELSEIDEENISAAAKFGWYKPLTDRMIQGSESSRMSMARAIVNLELKDLNLKLLGEQGVILPLLEMLSGSIESKELSLSSLVKLAKLHANKGIIAASGGVPLVLDLMFSCRMRPFITIKCCEILEKLASDDDGIDFLVDGKGNQLELENIITNLLALTQGPNSAHYRKPALRALLGICKFETGLVKKAVLAANGISLILPILDDSDSEIRETAINILFLFSQHEPQGLVEYLFSPRRLQALVGFLENDDNDDVQMAAAGLLANLPKSERELTMELIDLGGLDAILSILKNGTMEAKENALSALFRFTDPTNIESQHDLVKRGLYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTAVSKSTGCTRWWCFRPSKVPLCSAHGSVCSVSSTFCLLEANALPGLIRLLHGEVHATAYEAIQTLSTLVLEDFPQRGARVLHESNAMRPLLEILNWGTDSLKSEAIGLLEKVFVSKEMVEYYGTRARLSLLGLTGITVYGDGHLRRKAARVLSLLERYSKSSSSAFSGVQE 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00014 1018 SUPERFAMILY ARM repeat 336 667 IPR016024 -
Gma02g00014 1018 SUPERFAMILY ARM repeat 637 1006 IPR016024 -
Gma02g00014 1018 Gene3D - 8 123 IPR036537 GO:0007166
Gma02g00014 1018 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Gma02g00014 1018 Coils Coil 127 147 - -
Gma02g00014 1018 Gene3D - 538 855 IPR011989 -
Gma02g00014 1018 SMART arm_5 577 619 IPR000225 GO:0005515
Gma02g00014 1018 SMART arm_5 877 917 IPR000225 GO:0005515
Gma02g00014 1018 SMART arm_5 715 756 IPR000225 GO:0005515
Gma02g00014 1018 SMART arm_5 408 447 IPR000225 GO:0005515
Gma02g00014 1018 SMART arm_5 672 712 IPR000225 GO:0005515
Gma02g00014 1018 SMART arm_5 921 961 IPR000225 GO:0005515
Gma02g00014 1018 SMART arm_5 801 841 IPR000225 GO:0005515
Gma02g00014 1018 SMART arm_5 758 798 IPR000225 GO:0005515
Gma02g00014 1018 SUPERFAMILY RING/U-box 247 331 - -
Gma02g00014 1018 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 726 754 IPR000225 GO:0005515
Gma02g00014 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 333 IPR013083 -
Gma02g00014 1018 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Gma02g00014 1018 Gene3D - 863 1013 IPR011989 -
Gma02g00014 1018 Gene3D - 336 537 IPR011989 -
Gma02g00014 1018 Coils Coil 62 89 - -
Gma02g00014 1018 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Gma02g00014 1018 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1014 - -
Gma02g00014 1018 CDD RING-Ubox_PUB 265 307 IPR045210 -
Gma02g00014 1018 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1014 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00014 Gma-Chr2 160080 164123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00014 264 1016 U-box Gene Family AT1G76390 27.556 4.57e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00014 - - gsj:114377374 1917.89