Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00005 ATGGAAAGCAGAGTGGTATTTGAGAATGATTTGAATCTCAAGGCAACAGAGCTAAGATTGGGGTTGCCAGGGACGGAGGACAAAACCGTGCATGCTATTAGTATTAGAAACAACAAAAGGCAAGTGCCTGAAACTTCTCAAGAGTCTGTTTCCATTTCCAAGGCCTCACCTGACCAGCATGTGGAGAGTGATCCAGCCCCTCCAGCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCTTACAGGAAACAAAGCCTGCAGGAGGGTGATCAGGGGGATGGGATCTATGTGAAAGTGATCATGGATGGAGCACCTTACCTCAGAAAGATTGACTTGAAAGTCTATAGGGGCTATCCTGAACTACTCAAAGCTTTAGAAACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTACAAGGGTTCTGAATATGCACCTACATATGAAGACAAAGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTATGACTTCCTGCAAAAGGCTAAGAGTCATGAAAGGCTCAGAAGCTAGAGGGTTGGGTTGTGGTGTGTGA 579 0.4594 MESRVVFENDLNLKATELRLGLPGTEDKTVHAISIRNNKRQVPETSQESVSISKASPDQHVESDPAPPAKAKIVGWPPIRSYRKQSLQEGDQGDGIYVKVIMDGAPYLRKIDLKVYRGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRVMKGSEARGLGCGV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00005 192 Gene3D - 90 192 - -
Gma02g00005 192 MobiDBLite consensus disorder prediction 38 70 - -
Gma02g00005 192 Pfam AUX/IAA family 38 189 IPR033389 -
Gma02g00005 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 189 IPR003311 GO:0005634|GO:0006355
Gma02g00005 192 ProSiteProfiles PB1 domain profile. 95 182 IPR000270 GO:0005515
Gma02g00005 192 PANTHER AUXIN-INDUCED PROTEIN 1 189 - -
Gma02g00005 192 MobiDBLite consensus disorder prediction 38 58 - -
Gma02g00005 192 SUPERFAMILY CAD & PB1 domains 89 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00005 Gma-Chr2 57051 58932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00005 98 188 B3 DNA Binding Superfamily AT2G46530 37.363 6.24e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma02g00005 AUX_IAA 5.6e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00005 K14484 - gmx:100800212 393.275