Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00002 ATGAATGCAAAGGGGGTTGCTCCTGTGAATTCCACTTATGGGACCTTGATTAATGCTTATAGCAAAGGTGGACTCAAAGAGGAAGCACTAGCGCGGTTACAGAGGATGCAGAGTCAAGGAATGGAGCCTGATGAGGTCAAAAAGCATGATTGGAGGCTTACCTACTCTGGCTTTCCTCTGGAGCTGGTTGTTTGCCTTTTTATTGGCTACATGGTTGAGGCTATGATTGGAGCATTTCAATCACAGTATTTAGAATTACTACTGGATACTGGGACGGGAACAAGTTTTGACTTTTACGATTCGATTATTGCAACTTTGAAGTTGGGAACTCCTCAACGCCAAACTATAGGCATTACTTGGACTCCTCTTCCTGCGTCTAAAGTGAAGCTTAATGTTGACAAGAACTCCTTGGGTAACCTGGGACCTTCAGGATTTGGCATATTAATTCATGATTCTCATGGTTCTTGCGCAGAGCCGCCTCAACATCTGAAACAGACTCTATCCCTAATCCCTATCTTCTTCTCTGCTCTCTCCGCACGCTTTGGCTCCTCTGATCTCAGGTGTTGTTGGCTTGGTATCCGTGCAAGTTCTGCTGTAGCCGATTTGAAGAACATTGGTGCTGCAAACAGTGATGATGCCTTCTACAGGTATAAGATGCCTAGGATGATTACCAAAATTGAGGGCAGAGGTAACGGCATCAAAACTAATGTTGTCAATATGGTTGATATTGCCAAGGCATTGGCAAGGCCTGCGTCTTACACGACCAAGTATTTTGGTTGTGAACTTGGGGCCCAGTCAAAATTTGATGAGAAGACCGGCACTTCTCACGTCAATGGAGCACATGATACTGTTAAGCTTGCTGGCCTTCTTGAGAACTTCATTAAGAAATATGTTCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCATAATCACTAAGAACCAAATGATCCAGCTGAAATGCGCTGCTTGTGGTTTTGTGTCTGATGTTGATATGAGAGACAAGCTGACTACCTTCATCATTAAGAACCCTCCAGAGGTTAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGTGAAATGGCTGATGAGGAACAGAAGAAAGTGAAGAAAGAGGTTAAGAAGAAAGGCTCTTCATCTTCAAAAGATGGCACTGCTAAATCCACCTCTTCAAAGAAGAAAGCAAGTGGCTCTGATGAAGACCGCACTTCACCTACTCACAGTCAAATTGATGAGAAAGAGGAGGCTCCAGATGAAGATGATGGTGATGATGACGTGCAATGGCTGACAGATACATCACTTGATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTTATGCTTTCTACAGATGAACCAGAGAAGAAGAAAAAAGCAGCAAGTAACGGAAATGGCGGTTCTCAGAATGGTAACTCAATGCACTATGGGACCCTGGTTGGGGAAGTGAAAGCTAATTTGAAGAAAGGTATTGGAGCGAATGAATTGCTGTCCCATCTTTCAGCACATCCTGCACCTGCTCAAGAAAAGATGAGTGCTCTGGTTGAAGCTCTATTCGAGGGAACTGAGAAAGGTTTTGCTAAAGAAGCTGATAAGAAGAAGAACTACTTTGCTGCTGCTGTTGCCGAAGAGGGATCCCAGCTGTTATTGCTTCATGCTATTGAAGAATTTTCTTGCAAGTCTACTTCCAATGCTTTGAAGGAGGTTGCCCTGGTTCTAAAGGCACTCTATGATGCTGATGTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAAAAGGGACTGAAGGGCGATAACAAGAACTCTAAGATTTTGAAGAATGCTCAACCTTTCATTGATTGGCTTCAGAGTGCAGAATCAGAAACCGAGGAAGAATAA 1926 0.4382 MNAKGVAPVNSTYGTLINAYSKGGLKEEALARLQRMQSQGMEPDEVKKHDWRLTYSGFPLELVVCLFIGYMVEAMIGAFQSQYLELLLDTGTGTSFDFYDSIIATLKLGTPQRQTIGITWTPLPASKVKLNVDKNSLGNLGPSGFGILIHDSHGSCAEPPQHLKQTLSLIPIFFSALSARFGSSDLRCCWLGIRASSAVADLKNIGAANSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTVKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGSKDKKAMRRAEKERLKEGEMADEEQKKVKKEVKKKGSSSSKDGTAKSTSSKKKASGSDEDRTSPTHSQIDEKEEAPDEDDGDDDVQWLTDTSLDAARQRIQEQLSAVTADMVMLSTDEPEKKKKAASNGNGGSQNGNSMHYGTLVGEVKANLKKGIGANELLSHLSAHPAPAQEKMSALVEALFEGTEKGFAKEADKKKNYFAAAVAEEGSQLLLLHAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKNSKILKNAQPFIDWLQSAESETEEE 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00002 641 MobiDBLite consensus disorder prediction 347 423 - -
Gma02g00002 641 SMART 542_3 550 637 IPR003307 GO:0005515
Gma02g00002 641 MobiDBLite consensus disorder prediction 469 489 - -
Gma02g00002 641 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 297 332 IPR016190 GO:0003743|GO:0006413
Gma02g00002 641 ProSiteProfiles W2 domain profile. 482 641 IPR003307 GO:0005515
Gma02g00002 641 Pfam Domain found in IF2B/IF5 210 326 IPR002735 GO:0003743|GO:0006413
Gma02g00002 641 Gene3D - 304 344 - -
Gma02g00002 641 Gene3D - 492 632 - -
Gma02g00002 641 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 201 641 IPR045196 GO:0003743|GO:0006413
Gma02g00002 641 CDD W2_eIF5 525 639 - -
Gma02g00002 641 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 209 300 IPR016189 GO:0003743|GO:0006413
Gma02g00002 641 SMART eIF2Bneu4 214 328 IPR002735 GO:0003743|GO:0006413
Gma02g00002 641 SUPERFAMILY ARM repeat 492 635 IPR016024 -
Gma02g00002 641 Pfam eIF4-gamma/eIF5/eIF2-epsilon 563 641 IPR003307 GO:0005515
Gma02g00002 641 TIGRFAM PPR: pentatricopeptide repeat domain 12 45 IPR002885 -
Gma02g00002 641 Gene3D - 196 303 - -
Gma02g00002 641 Gene3D Tetratricopeptide repeat domain 1 53 IPR011990 GO:0005515
Gma02g00002 641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Gma02g00002 641 MobiDBLite consensus disorder prediction 346 437 - -
Gma02g00002 641 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 201 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00002 Gma-Chr2 19544 25327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00002 202 634 Eukaryotic Initiation Factors Gene Family AT1G77840 62.642 1.65e-170 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00002 K03262 - gmx:100777906 793.497