Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02446 ATGGGCATTGTCATTGATGCTCCTCCATGTAATACTCAAGCTTACCAACGTGCAAAAGAGGTTCAAGCTAACCTATCTCCTCAATTCCCAACCTTTCTTAAGTCCATGCTTCCATCTCACGTAGCCGGAGGATTTTGGCTTGGTCTTCCCAAAAAATTCTGTAACTTGTATATGCCCAAGCTTGATACTACCATCGCTTTGGAAGATGAAACTGGCCAACTTTATGAAACCAAATATCTTGCTCAAAAGGCCGGTTTAAGTGCAGGATGGAGGGGCTTTTCCATAGCTCATAACTTACTTGAGATGGATGTTCTAATATTCCACCTGGTCCAACCTTCCAAGTTTAGGGTGTACATTATAAGATCTCAGGAATCTGATGAACTGGATGGTGCTCTTGTCCTTCTTAAGTCAGATGGGTGCAGAAAACAAAGTGATGATGCTAATGATCATAAGAATAGCGGGATGATTTTTTGTGCTAATGTGTCTCATCCAGACCAGGTTGAAAATACTAGTGAAGATTTTGACTCTGGAATTAGATTTTCAGAATCAGTTGTCAGTTTCAAGCAAGTGACTGGTGTGGAGAATTTCAGGATTGTGGTGAATGGTTTGGTTATTGATTCGGAGCTCTCCAAATACATTCGGAACAAGTATTATGAGCTGTGTTGCAGCCAGAGGTCGTTTCTTCATGACCATCTTCTTGAGGGTCTTAACACTAAACTGGCGGCTGGAATAATTTCTGAGACCATTAATATTGCCGATGCCATTAAAGCCAGCAATCTTACAACCTCTCCAGATAGTCTTGTCATATGGGACAAAACTTTGAAAGCCTTTGAGACAATGGGTATGAATGTCAGCTTCTTGCTTATTCGGCTAGACCAGCTCATGAAACTAGCTTTGAAATTGAAGAGGTACAAGGAGGTAACACTCGAAAGAGACCACGCTGCAGAGGAGTTGAAAGCTCTAGAAGCAAAACTATTGGAAGTAAAACAAACTATAAATAGACTTGATCAAGAGAATGATATACAACATATGCACCCTGAGAGGCTGGAGACTATGTTCCAAGAACTGGCTGATGCTCCTTGGTGA 1086 0.4134 MGIVIDAPPCNTQAYQRAKEVQANLSPQFPTFLKSMLPSHVAGGFWLGLPKKFCNLYMPKLDTTIALEDETGQLYETKYLAQKAGLSAGWRGFSIAHNLLEMDVLIFHLVQPSKFRVYIIRSQESDELDGALVLLKSDGCRKQSDDANDHKNSGMIFCANVSHPDQVENTSEDFDSGIRFSESVVSFKQVTGVENFRIVVNGLVIDSELSKYIRNKYYELCCSQRSFLHDHLLEGLNTKLAAGIISETINIADAIKASNLTTSPDSLVIWDKTLKAFETMGMNVSFLLIRLDQLMKLALKLKRYKEVTLERDHAAEELKALEAKLLEVKQTINRLDQENDIQHMHPERLETMFQELADAPW 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02446 361 CDD B3_DNA 30 121 IPR003340 GO:0003677
Gma01g02446 361 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 293 IPR044837 -
Gma01g02446 361 Gene3D - 11 125 IPR015300 -
Gma01g02446 361 Pfam B3 DNA binding domain 32 122 IPR003340 GO:0003677
Gma01g02446 361 SMART B3_2 32 123 IPR003340 GO:0003677
Gma01g02446 361 Coils Coil 304 338 - -
Gma01g02446 361 SUPERFAMILY DNA-binding pseudobarrel domain 25 122 IPR015300 -
Gma01g02446 361 ProSiteProfiles B3 DNA-binding domain profile. 32 123 IPR003340 GO:0003677
Gma01g02446 361 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 12 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02446 Gma-Chr1 59080223 59081660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02446 14 149 B3 DNA Binding Superfamily AT3G19184 46.043 5.72e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma01g02446 B3 9.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02446 - - gmx:100782165 709.138