Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02445 ATGTTTGGCGGGGGCGGCGTGAGCGTGAGAATGGAGGAAGAGGAAGATGAAGTGGGTTGGTGTTCTTCTGATTCGGGCGACGGCGACGGCGACGACGATATCGAAGAACGGAAATCTCAGAATGTGGATGCCTTGCTCAGGGGCAACCTCGTGGTGAAGAGACAATCGTTGCTACCGCGACTTCTATCAGTATCGCAAGGAGCGGCTGTTTGTAGAAAGCCCTTCAAACCTCCATGCTCTAAATCTCATGCTTCCGCTTCCGCTTACAATCAAGACCTTACTCGTAAGCTTTCCGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCCTCTCCTATTCCTATTCCTATTCCTAGATCTGCCTTAGACGACTCCAAATTCAATGTTGCTGTTGCTGTTGCTGATGTTGCCGAGGAGCTCAAGCCCTCTTTGCCTCCCGGGATTGATCCTCTCGTATTGTGGCACCCTCAAGACTCCGAGGATGCTAATGCTAATTTTACCACCATAACAGTTGATCCGTTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCTCAGGCCTGTCTACCACACCAAATATACACGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACATTGCAGTCCATCACATTACTATATACTCTACTTTCTCAAGGGTTTGATGGCAAACCAATGGTTCGAAAGGCCATCATTGTGACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCAAAAAGTGGGTTGGAGAAAGAGTTCCTCTTGTTGCTTTATGTGAAAGCACAAGGGAAGATGTCATCTCCGGGATTGACAATTTTACAAGTCCCAAAAGCAATTTACAGGTGCTCATTGTTTCATATGAGACATTTCGAATGCATTCGTCAAAGTTTAGCTCTACTGACTCATGTGACCTTCTCATATGTGATGAGGCTCACAGACTGAAAAATGATCAGACGATAACAAACCGGGCATTGGCAGCTCTCCCCTGCAAACGTAGAATTTTGTTGTCAGGAACTCCCTTGCAAAATGACTTAGAAGAATTCTTTGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGATATTGCACATTTTCGACGTTACTATGAGGCACCAATTATTTGTGGAAGAGAACCTGCTGCCACTGCGGAAGAGAAGAAGCTAGGTGCTGAACAGTCTGCTGAATTAAGTGTCAATGTTAACCGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTACCACCTAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTGCAGTCAGAACTATATAAACATTTTATACAATCCAAAAATGTTAAGCGGGCAATTACTGAAGAACTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAGTTGTGCAATCATCCAAAGCTTATCTATGATACCATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGTATCCGATTCTTCCCTCCTGAAATGTTATCTGGAAGGTCTGGCTCATGGACGGGAGGGCATGGAGCATGGGTTGAGCTATCAGGGAAAATGCATGTCTTAGCAAGATTACTTGCTCATTTACGTCAGAGAACAAATGACCGCATTGTCCTTGTCTCAAACTACACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCTCACTTGAGGCTTGACGGCTCTACATCAATCAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGATCCATCCAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTCGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGACAGAAGAAAAGAGTTTATATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACCGATAGCCTTGTGGCACAGGGTAACTTGCTTTCAACAGAGAATCTTCGTGATTTGTTTACTTTTCATGAGAACATCAAGTCAGAGATTCATGAAAACATGCAATGCAGTCGGTGTCAAACATTTGATGGCCCTCGAAGCACTGAAGCCCAGTCAACAATAACAGATAGTGAATCTGATGAAGAAACCTCTGATATTGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAGCCCATTGGAAGAGGATTTAGGAAGTTGGGGCCATCATTTTTTCCCAACTTCTGTACCAGATGCTATACTTCAGGCTTCAGCCGGTGATGAGGTGACTTTTGTTTTCACAAACCAAGTTAACGGACGACTGGTACCCGTTGAATCTATTATGAGTCCCAAGCTACAGCAAAAGGATCCAAAAAAGGAATTACTCAAGTCAAAGCAGAACGGTAAACAAAAGCCCACTCCTTTTTCTTTACATAACAGACTACCATTGCAGTCTGCTTCTGTCGGGATTACTAAAAACATCTCCATGAATGTGGCATTTAAGCCCCAGTACTCTCTTGTAAGTAAAGTATTGCCACAGAAAAGATCATGTCCTGCTAATATCAATGATGATAATTGA 2703 0.4332 MFGGGGVSVRMEEEEDEVGWCSSDSGDGDGDDDIEERKSQNVDALLRGNLVVKRQSLLPRLLSVSQGAAVCRKPFKPPCSKSHASASAYNQDLTRKLSARKRFVPWGSSSPIPIPIPRSALDDSKFNVAVAVADVAEELKPSLPPGIDPLVLWHPQDSEDANANFTTITVDPLLVRYLRPHQREGVQFMFDCVSGLSTTPNIHGCILADDMGLGKTLQSITLLYTLLSQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGERVPLVALCESTREDVISGIDNFTSPKSNLQVLIVSYETFRMHSSKFSSTDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPAATAEEKKLGAEQSAELSVNVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSELYKHFIQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGSTSISKRQKLVNCFNDPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVAQGNLLSTENLRDLFTFHENIKSEIHENMQCSRCQTFDGPRSTEAQSTITDSESDEETSDIGGFAEIAGCLQNLKRSEKQVGSPLEEDLGSWGHHFFPTSVPDAILQASAGDEVTFVFTNQVNGRLVPVESIMSPKLQQKDPKKELLKSKQNGKQKPTPFSLHNRLPLQSASVGITKNISMNVAFKPQYSLVSKVLPQKRSCPANINDDN 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02445 900 MobiDBLite consensus disorder prediction 1 35 - -
Gma01g02445 900 MobiDBLite consensus disorder prediction 823 853 - -
Gma01g02445 900 CDD DEXHc_RAD54 178 419 - -
Gma01g02445 900 MobiDBLite consensus disorder prediction 17 31 - -
Gma01g02445 900 MobiDBLite consensus disorder prediction 727 748 - -
Gma01g02445 900 SMART helicmild6 563 647 IPR001650 -
Gma01g02445 900 CDD SF2_C_SNF 530 658 - -
Gma01g02445 900 PANTHER SNF2/RAD54 FAMILY MEMBER 61 826 - -
Gma01g02445 900 Gene3D - 151 418 IPR038718 -
Gma01g02445 900 Gene3D - 441 710 - -
Gma01g02445 900 Pfam Helicase conserved C-terminal domain 538 646 IPR001650 -
Gma01g02445 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 419 IPR027417 -
Gma01g02445 900 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 61 826 - -
Gma01g02445 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 808 IPR027417 -
Gma01g02445 900 MobiDBLite consensus disorder prediction 827 841 - -
Gma01g02445 900 Pfam SNF2-related domain 181 487 IPR000330 GO:0005524|GO:0140658
Gma01g02445 900 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 536 697 IPR001650 -
Gma01g02445 900 Gene3D - 419 726 IPR027417 -
Gma01g02445 900 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 369 IPR014001 -
Gma01g02445 900 SMART ultradead3 174 377 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02445 Gma-Chr1 59063805 59077853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02445 527 705 RAD5 or RAD16-like Gene Family AT5G43530 36.111 2.15e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma01g02445 SNF2_N 4.1e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02445 K10875 - gmx:100781631 1779.61