Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02421 ATGAAGAATCGTAGGAGGATGCAGTTGGGAAATTTGGTGGAGTCGATCAAATCGAAGGTGAGATCTTTGAAGCCGAAGAAGGGAAAGAAGCCATATATGAAGATGGACAAGAGTGCCAGCGTCAAGGACAAGCGCCTCAGGGTGAAGGGACCTGTTAGGATGCCAACTAAAGTCCTTAACATCACCACCAGGAAGTCCCCATGTGGTGAAGGCACCAACACATGGGACAGATTTGAGCTGCGTGTGCACAAGAGAGTTATTGATCTCCACAGTTCCCCAGATGTGGTTAAGCAAATTACCTCAATCACAATTGAACCTGGTGTCGAGGTCGAGGTCACCATTGCAGATGCTTGA 354 0.4802 MKNRRRMQLGNLVESIKSKVRSLKPKKGKKPYMKMDKSASVKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLHSSPDVVKQITSITIEPGVEVEVTIADA 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02421 117 PRINTS Ribosomal protein S10 family signature 52 67 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma01g02421 117 PRINTS Ribosomal protein S10 family signature 74 88 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma01g02421 117 Gene3D Ribosomal protein S10 domain 2 116 IPR036838 -
Gma01g02421 117 TIGRFAM uS10_euk_arch: ribosomal protein uS10 40 114 IPR005729 GO:0003735|GO:0006412|GO:0015935
Gma01g02421 117 MobiDBLite consensus disorder prediction 21 42 - -
Gma01g02421 117 SUPERFAMILY Ribosomal protein S10 40 114 IPR036838 -
Gma01g02421 117 PANTHER RIBOSOMAL PROTEIN S10-RELATED 36 116 - -
Gma01g02421 117 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 36 116 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma01g02421 117 SMART Ribosomal_S10_2 17 113 IPR027486 -
Gma01g02421 117 Hamap 30S ribosomal protein S10 [rpsJ]. 15 114 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma01g02421 117 Pfam Ribosomal protein S10p/S20e 41 113 IPR027486 -
Gma01g02421 117 ProSitePatterns Ribosomal protein S10 signature. 41 56 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02421 Gma-Chr1 58920369 58923049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02421 42 117 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 94.737 1.28e-48 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02421 K02969 - gmx:100819036 155.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02421 01 58920369 58923049 Gma11g00021 11 119722 121769 GST