Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02411 ATGGCTTCGTGGAAGAAGCTGGTGTTGTTGTTGTTGATCTTTCTCTGCACTTGTAAAGCACAGGAGGAACAGAGCTCCACCCCGGTGTACCTGTACCATAACTGTTCCGGCGGCAACACCACCGCCAACAGTGcctaccaactcaacctgaggaccctcctcacttccctgtcttccaacgccaccaccaccgaattctccaacaacaccgtgggactgggaacatccccgtccgacagggtgtacggcctgttcatgtgcaggggtgacgtgccctctgctctgtgccaacagtgcgtggtgaacgcaacggggcttctccgctcccagtgctccctggccaaacaggccgtcatttggtacgacgagtgcaccgtgcggtactcgaaccgctccttcttctccacagtggacacgcggccacgtctcggcctcctgaacaccgccaacatctccaaccaggattccttcatgcgcctgcttttccaaaccataaacagaacCGCTGACGAGGCTGCAAACTTTTCCGTGGGTTTGAAGAAATACGCAGTGAATCAAGCCAACATTTCTGGGTTTCAGTCTCTATACTGTTTGGCTCAGTGCACGCCGGATCTGTCCCAGGAAAACTGTAGAAGTTGTCTGAGTGGTGTGATTGGAGACCTTCCTTGGTGCTGTCAGGGAAAGCAGggaggaagggttctctatcctagctgtaatgtcaggtacgagctctaccctttctaccgcgtcactgcttcccctccttcatcttcaccttcaccgccaacacttcttcctcctccaacttcaccaatttccccagGAAGCAGTGGGATCTCAGCTGGAACGATTGTTGCAATTGTGGTTCCAATTACGGTCGCTGTGCTTATATTTATAGTCGGAATTTGTTTCTTGAGTAGAAGAGCAAGGAAGAAGCAGCAGGGTTCTGTAAAGGAAGGAAAAActgcgtatgacatccccactgtggactccttgcaattcgatttcagcacaattgaagcggccacaaacaagttctctgccgataacaagttgggggaaggtggatttggtgaggtttacaagggcactctttcgagtggacaagtagtagctgtcaagagactctccaaaagctctggacaaggtggagaagaatttaagaatgaagtggtggtggttgccaagcttcaacatagaaatttagtcaggcttcttgggttttgcttgcaaggagaagagaagatacttgtttatgaatatgtgcccaacaaaagtctcgactatattctctttgatcctgaaaagcaaagggagttggattgggggagacgttacaagattattggagggattgctcgaggcattcaataccttcatgaagattctaggcttagaattatacatcgtgatcttaaagctagtaacatattgttggatggagatatgaatccgaaaatctcagattttggcatggcaagaatatttggagtcgatcaaactcaaggaaacaccagcagaatagtagggacttatggttacatggctccagagtatgccatgcatggagagttctctgttaagtctgacgtgtacagttttggagtcctgctcatggagattttaagtggcaagaagaatagctctttctatcaaacggatggtgctgaggatctattgagctatgcttggcaactttggaaggatggaacacctttggaactgatggaccccatattaagagaatcctataatcagaatgaagtcatcagaagcatccatattgcgaaatggatcctcgataaGCTTGATCGCTTGGAGGTTCTAATATGTATTATTATCCATGTAAGCCGTATATTTTATTTTATCCAAGACAATTATTGTTTTCTCCCCGACGAATGTGAGTTCCTGAAATGTATCGAACATAGTAAAGACTTGTTGAGTTGCTATTTTGTTCAACGTTTACGAGCTTAA 1974 0.1413 MASWKKLVLLLLIFLCTCKAQEEQSSTPVYLYHNCSGGNTTANSAYQLNLRTLLTSLSSNATTTEFSNNTVGLGTSPSDRVYGLFMCRGDVPSALCQQCVVNATGLLRSQCSLAKQAVIWYDECTVRYSNRSFFSTVDTRPRLGLLNTANISNQDSFMRLLFQTINRTADEAANFSVGLKKYAVNQANISGFQSLYCLAQCTPDLSQENCRSCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRVTASPPSSSPSPPTLLPPPTSPISPGSSGISAGTIVAIVVPITVAVLIFIVGICFLSRRARKKQQGSVKEGKTAYDIPTVDSLQFDFSTIEAATNKFSADNKLGEGGFGEVYKGTLSSGQVVAVKRLSKSSGQGGEEFKNEVVVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYILFDPEKQRELDWGRRYKIIGGIARGIQYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGMARIFGVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLLMEILSGKKNSSFYQTDGAEDLLSYAWQLWKDGTPLELMDPILRESYNQNEVIRSIHIAKWILDKLDRLEVLICIIIHVSRIFYFIQDNYCFLPDECEFLKCIEHSKDLLSCYFVQRLRA 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02411 657 CDD STKc_IRAK 352 588 - -
Gma01g02411 657 Gene3D Transferase(Phosphotransferase) domain 1 422 607 - -
Gma01g02411 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Gma01g02411 657 SUPERFAMILY Protein kinase-like (PK-like) 331 601 IPR011009 -
Gma01g02411 657 ProSiteProfiles Gnk2-homologous domain profile. 139 247 IPR002902 -
Gma01g02411 657 Pfam Protein tyrosine and serine/threonine kinase 348 547 IPR001245 GO:0004672|GO:0006468
Gma01g02411 657 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 596 - -
Gma01g02411 657 Gene3D - 27 133 IPR038408 -
Gma01g02411 657 Gene3D - 142 247 IPR038408 -
Gma01g02411 657 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 596 - -
Gma01g02411 657 ProSiteProfiles Gnk2-homologous domain profile. 28 133 IPR002902 -
Gma01g02411 657 Pfam Salt stress response/antifungal 152 245 IPR002902 -
Gma01g02411 657 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Gma01g02411 657 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Gma01g02411 657 SMART serkin_6 346 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02411 657 Gene3D Phosphorylase Kinase; domain 1 306 421 - -
Gma01g02411 657 ProSiteProfiles Protein kinase domain profile. 346 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02411 Gma-Chr1 58824898 58828036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02411 25 596 Receptor kinase-like Gene Family AT4G05200 56.076 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma01g02411 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02411 - - gmx:100305391 1109.36