Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02409 ATGATTCATTCTCTAATGATTTCAAAACCCATTCAATTGCTCCTTCTTTGCACTTTTGCTTTATTTTCAGACGTTGTATTTGCCGATCCACCGTATAATATTTGTTCCACAAGCATCAGTTATGCAAAAGAAAGTTCCTTTGAAAACAATCTAACGAACCTCCTTTCCTCTTTATCCTCCAATGCTTCAATCTCCAAATTCTATAATACTTCTAATGGGATTGGCCCAGATAGAGTTTATGGCCTCTACATGTGCCTCGACTATATTACAAATGAATCTTGCAAGACATGCATCACGACAGCAACAGAGGACATTGTCAAACTCTGTCCTCTAGCCACAGAAGCAGTTGTATGGGAGGAGTTTTGTCTATTACGTTATTCCAACAGCAATTTCATTGGTAGTTTGAATGTCACAGGGAACATTGGCTTAGATAATAAACAGAATCTTTCAGAGCCAGAGAAATTTGAGTCCGCTGTGAATCAGACAATAAGTAATCTTACTAAGGTAGCATCTTTTGGTGTTTCGGCAAACATGTATGCTACTGGAGAAGTCCCCTTTGAAGATGAAACAATATATGCCTTAGTGCAGTGCACCAGAGATTTAATTGCCAGTGATTGTAGTAGGTGCCTGCAAAGTGCCATTGGAGATATACCAGGTTGCTGCTATGCCTCCATTGGGGGTAGAGTTCTGAGCCGTAGCTGTTATTTGAGGTATGAATTTTATGCCTTTTATCATGGTGCAACAGGACCCACGAATTCTACAACTGGCAAAAAAGAAAGCAAAAATAATTCAAGCAAACTATGGATGATTACAGGAATTATAGTCGTGGTAGGCTTGGTGATAGTATTTGTCATTTTCGGACTGTACCTTGTCGGGATTAAAAGAAAACGGCAGAGTAAGAATGGAATAGACAATCATCAAATCAGTCTTGGATCTCTTcgcgtggctaccaataatttttctgatttgaataagctcggacaaggtggctttggccctgtttacaaggggaaacttagagatggccaagaggttgcaatcaagaggctctcaacttgctctgaacaaggctcagaggaattcataaacgaggttcttctgataatgcaacttcaacacaaaaatcttgtaaagcttcttggattttgtgtagatggagaagagaagcttcttgtgtatgaatttttacccaatggcagtcttgatGTGGTACTCTTCGatccaaaacaacgtgaaagactagattggactaaacgcctggatataataaatggaatagcaagggggatactttatcttcatgaagattctcgactgaaaataattcatagagacctaaaagcaagtaatgtattgttggactatgacatgaatccaaagatctcagactttggaatggcaaggatatttgcaggaagtgaaggtgaagctaacactgctacaatagttggcacatatggttatatggctccagagtatgcaatggagggattatattccataaagtctgatgtttttgggtttggtgtactattgctggagataattacagggaaacgtaacgcgggtttctatcactctaacaagactccaagccttctatcatatgcatggcatctatggaatgaaggaaaggggttggaactaattgatcccatgtcagttgattcatgccccggagatgagtttttgagatacatgcatattggattgctatgtgttcaagaagatgcatatgataggccaaccatgtcttcagttgttttgatgttgaagaacgaatcagcaacgctaggccaaccagaacgaccacctttctctcttggcagattcaatgctaatgagccagattgccaagACTGCTCACTCAATTTCTTGACTCTGTCAGATATAGTGCCCCAGTGA 1905 0.2073 MIHSLMISKPIQLLLLCTFALFSDVVFADPPYNICSTSISYAKESSFENNLTNLLSSLSSNASISKFYNTSNGIGPDRVYGLYMCLDYITNESCKTCITTATEDIVKLCPLATEAVVWEEFCLLRYSNSNFIGSLNVTGNIGLDNKQNLSEPEKFESAVNQTISNLTKVASFGVSANMYATGEVPFEDETIYALVQCTRDLIASDCSRCLQSAIGDIPGCCYASIGGRVLSRSCYLRYEFYAFYHGATGPTNSTTGKKESKNNSSKLWMITGIIVVVGLVIVFVIFGLYLVGIKRKRQSKNGIDNHQISLGSLRVATNNFSDLNKLGQGGFGPVYKGKLRDGQEVAIKRLSTCSEQGSEEFINEVLLIMQLQHKNLVKLLGFCVDGEEKLLVYEFLPNGSLDVVLFDPKQRERLDWTKRLDIINGIARGILYLHEDSRLKIIHRDLKASNVLLDYDMNPKISDFGMARIFAGSEGEANTATIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGFYHSNKTPSLLSYAWHLWNEGKGLELIDPMSVDSCPGDEFLRYMHIGLLCVQEDAYDRPTMSSVVLMLKNESATLGQPERPPFSLGRFNANEPDCQDCSLNFLTLSDIVPQ 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02409 634 SMART serkin_6 320 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02409 634 ProSiteProfiles Gnk2-homologous domain profile. 137 243 IPR002902 -
Gma01g02409 634 ProSiteProfiles Gnk2-homologous domain profile. 29 131 IPR002902 -
Gma01g02409 634 CDD STKc_IRAK 326 593 - -
Gma01g02409 634 SUPERFAMILY Protein kinase-like (PK-like) 305 617 IPR011009 -
Gma01g02409 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Gma01g02409 634 Gene3D Transferase(Phosphotransferase) domain 1 396 601 - -
Gma01g02409 634 Gene3D - 141 243 IPR038408 -
Gma01g02409 634 Gene3D - 30 131 IPR038408 -
Gma01g02409 634 Pfam Protein tyrosine and serine/threonine kinase 324 589 IPR001245 GO:0004672|GO:0006468
Gma01g02409 634 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 26 32 IPR002052 GO:0003676|GO:0008168|GO:0032259
Gma01g02409 634 ProSiteProfiles Protein kinase domain profile. 320 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma01g02409 634 Pfam Salt stress response/antifungal 147 240 IPR002902 -
Gma01g02409 634 Pfam Salt stress response/antifungal 35 128 IPR002902 -
Gma01g02409 634 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 58 631 - -
Gma01g02409 634 Gene3D Phosphorylase Kinase; domain 1 291 395 - -
Gma01g02409 634 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 58 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02409 Gma-Chr1 58813360 58816103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02409 26 608 Receptor kinase-like Gene Family AT4G05200 44.822 6.85e-179 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma01g02409 PK_Tyr_Ser-Thr 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02409 - - gmx:102669364 1251.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02409 01 58813360 58816103 Gma11g00025 11 179849 184710 GST