Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02405 ATGGCTATCCAACAATCTCTGTTAGACAGGCCTAGAAAATCTGTTTCCAAAACTATCTGCTTAATCTTTTCTATAGCTGCTGTCATGAGCTCATCAGCCTTTGTTGGTTCTTATCTCATCAAATCCACCTCCTTCTTCAACCAATCCTCTCCTCAACATCTCTGTGATCATGCACTTGATAGGGCAACATGTTTAACCCATGTCTCAGAAGTGGTACAAGGTCCGATCTTGACCCCCACAAAAGACCACAAATTCAATTTGTTACAGTCATTCCTAATGAAATACACCTCACACATTAAGAGAGTTATGAACACAGCCAGTTCTATCAAACTTAGGATCAACAGTCCCAAAGAAGAAGAAGCTTTGCACGATTGTGTGGAGTTGATGGACTTATCTATCAGCAGAGTTAGGGACTCAATGGTGACCCTAACAAAACAAACCATTGAGTCCCAACAAGATGCACACACATGGCTAAGTAGCGTGCTTACTAACCATGCAACTTGTTTGGATGGGTTAGAGGGGTCAGCTAGCGCCTTTATGAAGGACGAACTCGAGGACTTGATATCCAGAGCAAGAACTTCTCTGGCCATGTTTGTTGCTGTTTTGCCCCCAAAGGTTGAACAAATTATTGATGAACCTTTAAGTGGAGACTTTCCCTCATGGGTGAGCAGCAAGGATCGGAGACTTTTGGAGTCTACTGTTGGCGACATcaaggccaatgttgtggtagctaaggatggaagtggcaagtttaagactgtggctgaggctgtagcatccgcacctgacaacggtaagacaaggtatgttatttacgtgaaaaagggaacttataaagaaaatgttgaaatcggcaagaagaagaccaacgtgatgcttgtaggagatggtaaggatgcaactgtaatcaccggcaacttgaatttcatcgacggaacaaccacgtttaagactgccactgttgctgcttcgacattgGACAGCCACATTGACCCAACAGGATGGGCTGAATGGGATGCCCAAAGTAAAGACTTTTTGCAAACGTTGTATTATGGAGAGTACATGAATAATGGCCCCGGTGCCGGTACCAGCAAGAGAGTGAATTGGCCTGGTTACCATATCATCAAAACTGCAGCTGAGGCCAGCAAGTTCACGGTAGCACAACTCATCCAAGGCAATGTTTGGTTGAAGAACACTGGGCACAATGAGAATAGAGGATATGCTGACAGGGTAAAAAGCTTATCAAAAGGGAACAATTCAAAGAAGGATGTTTTATCTTCTAATTTTAACCTTAAAGAAACGACTATTATTCGCGCAGCTGATACATGGCCTGAAGAAAATGAAAGAGATGAATTTAGTCCTGCTTTAGATTACTGTGAACTGGTGAAACCATCATGGAAGAAAAATGGAAAGATAGAGCCATATGGAAGAAAGCCTTGTAAATGCTCATCGGTAGTAACTGTTCATCATGACTGGACTCAAACAGTGGCCCAGCACCAGAAAATAGAGATTATGGACATATGTCAAAAGGCTTTTGGCAGCTTCCTTGGAGAGAACACCTCAGCCTCAGTCATGTATGTGGCAGTCACTGATCTGTGGTCTGAAAACCTGAGTTCAGTCCTTCCATATCTAAGTAATCTCATTCCAGTGCTATATATGAAAGAATACGATCACACCTGA 1680 0.3583 MAIQQSLLDRPRKSVSKTICLIFSIAAVMSSSAFVGSYLIKSTSFFNQSSPQHLCDHALDRATCLTHVSEVVQGPILTPTKDHKFNLLQSFLMKYTSHIKRVMNTASSIKLRINSPKEEEALHDCVELMDLSISRVRDSMVTLTKQTIESQQDAHTWLSSVLTNHATCLDGLEGSASAFMKDELEDLISRARTSLAMFVAVLPPKVEQIIDEPLSGDFPSWVSSKDRRLLESTVGDIKANVVVAKDGSGKFKTVAEAVASAPDNGKTRYVIYVKKGTYKENVEIGKKKTNVMLVGDGKDATVITGNLNFIDGTTTFKTATVAASTLDSHIDPTGWAEWDAQSKDFLQTLYYGEYMNNGPGAGTSKRVNWPGYHIIKTAAEASKFTVAQLIQGNVWLKNTGHNENRGYADRVKSLSKGNNSKKDVLSSNFNLKETTIIRAADTWPEENERDEFSPALDYCELVKPSWKKNGKIEPYGRKPCKCSSVVTVHHDWTQTVAQHQKIEIMDICQKAFGSFLGENTSASVMYVAVTDLWSENLSSVLPYLSNLIPVLYMKEYDHT 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02405 559 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Gma01g02405 559 SUPERFAMILY Pectin lyase-like 238 323 IPR011050 -
Gma01g02405 559 Pfam Plant invertase/pectin methylesterase inhibitor 52 189 IPR006501 GO:0004857
Gma01g02405 559 Gene3D - 234 323 IPR012334 -
Gma01g02405 559 SUPERFAMILY Pectin lyase-like 323 401 IPR011050 -
Gma01g02405 559 CDD PMEI-like_4 87 201 - -
Gma01g02405 559 Pfam Pectinesterase 240 324 IPR000070 GO:0030599|GO:0042545
Gma01g02405 559 Gene3D - 324 408 IPR012334 -
Gma01g02405 559 PANTHER PECTINESTERASE 12 323 - -
Gma01g02405 559 PANTHER PECTINESTERASE 321 401 - -
Gma01g02405 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 197 IPR035513 -
Gma01g02405 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
Gma01g02405 559 PANTHER PECTINESTERASE 12 323 - -
Gma01g02405 559 PANTHER PECTINESTERASE 321 401 - -
Gma01g02405 559 TIGRFAM PME_inhib: pectinesterase inhibitor domain 46 177 IPR006501 GO:0004857
Gma01g02405 559 SMART PMEI_2 46 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02405 Gma-Chr1 58783699 58788247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02405 316 400 Carbohydrate Esterase AT1G11580 56.471 1.51e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02405 K01051 - gmx:100815836 625.55