Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02402 ATGTTTGACACAAACATGTTTGATTCTCACCCTCACTTGCTTGATATGTCACCACCCCACAAGACTACTTGCTCTGAGAGTGATTTGGCAAAGCCCTGCAGAGATGATGAGTACGAGACCAAATCTATCACTGACACCATGGACGCTCCTTCTGGCGACGACCAAGATCCCAACCCGCGACCCAAAAAGAAGGGTTACCGCCGCCACACACAGCGCCAAATTGAAGAAATGGAAGCCTTCTTCAAGCAGTGTCCTCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAACATGAACGAAATGAAAATGCTATTTTGAAGGCAGAGAATGAAAAGCTTCGCGCTGAGAACAGCAGGTACAAGGAGGCCCTAACCAATGCTACATGCCCCAACTGTGGAGGCCCAGCTGCTCTTGGCGAAATGTCCTTCGACGAGCAACACTTGAGGATTGAGAATGCTCGGTTAAGAGAAGAGATCGATAGGATTTCAGGAATTGCTGCCAAATATGTTGGAAAGCCAGTGACTTCTTCGTACTCCAACCTCTCATCTCTGAATAACAACCACGTGCCTGTCGGTAACTATGGATCACAGTCAGGCACGGTAGGAGAAATGTATGGAGGCAGTGACCTTTTTAGGCCACTCCCAGCTCCTGCTGATGCTGACAAACCCATGATTGTGGAGCTTGCTGTTGCAGCTATGGAGGAACTCACAAGACTAGCTCAGGCTGGAGAGCCTTTGTGGGTCCCAAGCAACCACCATTCTGAGATTCTAAATGAAGATGAATACTTGAGGACTTTCCCTACTAGAGGTTTAGGACCCAAACCCTTGGGCTTGAGATCAGAAGCTTCAAGGGAATCCGTGGTGGTCATCATGAATCACATTAACCTTATTGATATCCTTATGGATGTGAATCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAATAGCAGGAAACTACAACGGAGCCTTGCAAGTGATGTCATCTGAGTTCCAAGTCGCTTCACCACTTGTTCCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCAACCAGATGGGATATGGGCAGTGGTGGATGTTTCCTTGGATAATCTGCGACCCAGTACAATCTCAAGAAGCCGAAGAAGGCCCTCTGGTTGTTTAATTCAAGAATTGCCAAACGGTTACTCCAAGGTTACATGGATTGAACATGTGGAAGTGGATGATAGAGCAGTGCATAGCATATATAGAACTCTGGTTAATTCAGGCCTGGCCTTTGGAGCTAAACGCTGGGTAGCTACATTAGAAAGACAATGCGAACGTCTTGCCAGTTCAATGGCCAACAACATACCAGCAGGGGACCTCTGTGTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAATGGTAATGAGCTATTGCACTGGTGTTGGTGCTTCTACCGCGCATGCTTGGACAACGCTCTCCGCAACTGGATGTGATGATGTAAGGGTAATGACAAGAAAGAGCACCGACGAACCTGGCAGACCCCCCGGTATAGTGCTCAGTGCTGCCACTTCTTTTTGGCTTCCTGTTCCTCCAAAGAGGGTTTTTCATTTCCTACGTGATCAAAACTCAAGAAATGAGTGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATAGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACAGATTCAACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTATGAATGTTGTCTTGAGTGGAGGGGATCCAGACTATGTTGCCCTGCTCCCCTCGGGCTTTGCTATTCTACCTGATGGGCCTCCTGCATTAAACGGTGGGCCCATACATGATGTTGGGTCTGGAGGTTCTCTACTCACAGTTGCATTCCAGATCTTAGTTGATTCAGCCCCAACTGCAAAGCTATCTCTGGGTTCAGTCGCCACTGTTAACAGTTTAATTAAGTGCACAGTTGAAAGGATCAAAGTTGCAGTCATACGTGACAACACCACCTGA 2196 0.4722 MFDTNMFDSHPHLLDMSPPHKTTCSESDLAKPCRDDEYETKSITDTMDAPSGDDQDPNPRPKKKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERNENAILKAENEKLRAENSRYKEALTNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSSYSNLSSLNNNHVPVGNYGSQSGTVGEMYGGSDLFRPLPAPADADKPMIVELAVAAMEELTRLAQAGEPLWVPSNHHSEILNEDEYLRTFPTRGLGPKPLGLRSEASRESVVVIMNHINLIDILMDVNQWSTVFCGIVSRALTLEVLSTGIAGNYNGALQVMSSEFQVASPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPSTISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYRTLVNSGLAFGAKRWVATLERQCERLASSMANNIPAGDLCVITSAEGRKSMMKLAERMVMSYCTGVGASTAHAWTTLSATGCDDVRVMTRKSTDEPGRPPGIVLSAATSFWLPVPPKRVFHFLRDQNSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPPALNGGPIHDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVIRDNTT 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02402 731 CDD homeodomain 63 121 IPR001356 GO:0003677
Gma01g02402 731 SMART HOX_1 62 124 IPR001356 GO:0003677
Gma01g02402 731 Coils Coil 114 149 - -
Gma01g02402 731 Gene3D - 50 136 - -
Gma01g02402 731 Gene3D - 317 473 IPR023393 -
Gma01g02402 731 MobiDBLite consensus disorder prediction 1 70 - -
Gma01g02402 731 MobiDBLite consensus disorder prediction 27 43 - -
Gma01g02402 731 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Gma01g02402 731 SUPERFAMILY Homeodomain-like 47 120 IPR009057 -
Gma01g02402 731 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 728 IPR042160 -
Gma01g02402 731 CDD START_ArGLABRA2_like 245 469 - -
Gma01g02402 731 SUPERFAMILY Bet v1-like 242 472 - -
Gma01g02402 731 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 15 728 - -
Gma01g02402 731 SUPERFAMILY Bet v1-like 491 721 - -
Gma01g02402 731 Pfam Homeodomain 63 118 IPR001356 GO:0003677
Gma01g02402 731 SMART START_1 250 470 IPR002913 GO:0008289
Gma01g02402 731 Pfam START domain 251 470 IPR002913 GO:0008289
Gma01g02402 731 ProSiteProfiles START domain profile. 241 473 IPR002913 GO:0008289
Gma01g02402 731 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02402 Gma-Chr1 58768928 58772133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02402 1 728 Homeobox Transcription Factor Family AT4G21750 75.163 0.0 1151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma01g02402 START 2.8e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02402 K09338 - gmx:100815499 1459.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02402 01 58768928 58772133 Gma11g00031 11 232747 235881 GST
Gma01g02402 01 58768928 58772133 Gma10g02379 10 51400645 51424512 PCT
Gma01g02402 01 58768928 58772133 Gma20g01334 20 40306640 40311355 PCT
Gma10g02379 10 51400645 51424512 Gma01g02402 01 58768928 58772133 PCT
Gma20g01334 20 40306640 40311355 Gma01g02402 01 58768928 58772133 PCT