Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02397 ATGGGTCCGATGCTACAAACCATTCTCACTGTGCTTCTTCTCCTTATGCTTCTTCTCATCGTCATTTTTCTTTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTCTCTTCGCGTTTCCTCTCCTCCATCAAGGGCGAGCTAGAGCGGCCCCTTTTTGGGGACGTAGGTGATGCGTCGTCGTTTAATCGGAGTAATGAATTGCCTCGAGATCATGATCTCGAGGGTGCGTGTTATCCCAGTGAAGCTCATTTCCGCTCTCCTCGAACCCATGGCCAAGTCCTTGTTCACAAGCAAAGGCTTCAAACCCTTAACATGCCCCAGCCACAGGCTGCTGATACTTTGGTTGTCGATGTCATCTCTGATCATTCCTCCTCCGAGGATCTTGATGTTGGTCAAACCCTTAAGCTTCCCTCATCTCATTTAGCTCAAATTCAAAAGCATGCCCTTCCCAATTTTCAAATTGATAGACTTCAGGACTTTGTGCAAAGGGATATCTCTGATCAAAGAAGTTGCCTCACTCTGGAGGTTATCAGTGGCCCTTCTCAGGGACTTCGTTATTCAGTACAGTCAACGAGCCCCTCTCGTCTTCCGCTGACCTTGGGAAGGGTTTCTCCGAGTGATTTGTTGATAAAGGATTCAGAAGTGTCGGGAAAGCATGCCATGATTAAGTGGAATTTGGATAAAATGAAATGGGAGTTGGTGGATATGGGTAGCCTCAACGGAACACTGTTGAATTCTACGCCGATCAACCATCCAGACACTGGAAGTAGGAATTGGGGGGATCCAATGAATCTTACTAATGGAGATATCATAACACTTGGAACAACATCAAAAGTAATGGTTCATATTACATCACAAACTCAGCATCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCGATGGCTTTGCATCGAGGAGGAAAAAGGTTTCCTATGGAAGACGTTTACTATTATCAATGGCCTCTACCTGGGCTGGATCAGTTTGGAATTTTTGGCATTTGTGATGGGCATTGTGGAGATGGGGCTGCCAAATCTGCTAGCAAACTTTTTCCTGAGATAATTGCTAGTATATTATCAGATTCATTAAAAAGGGAGAGGGTTTTATCACACCGTGATGCTTCAGATATTCTTCGAGAGGCATTTTCTCAAACAGAAGCACACATGAACAACTATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGACTGATGGTGGTGAAAATTTCTTTGCACAATGTGCTAACGTTGGAGATTCCACCTGTATTATGAGTGTGAATGGGAAACAAATCAAGATGTCAGAAGATCACAAGTTTACGAATTATTCTGAAAGACTCAGAATCGAAGAGACAGGTGAACCATTAAAAGATGGGGAAACACGTCTATATGGTATAAATCTGGCAAGAATGCTTGGGGACAAATTCCTGAAACAGCAGGATTCCCGGTTCAGTTCAGAACCTTATATTAGTCAAGTTGTGCATATTGATCAAGCAAGCAAGGCTTTTGCTATTCTAGCTAGTGATGGGTTATGGAATGTCATCAGCGTGAAGAAGGCAATTCAGCTCGTGTTGCAGATGAGGGAGAGATGCTATTCAGAGAGGCAGAATACAGCAGAAAAGATTGCTAGTTTGTTGTTGAATGAGGCTAAAACACTCAGAACAAAGGATAATACTTCTGTAATTTTCTTAGACTTTGATACCTTCAACAGATTCTCTTGTAAAGTTGAATCCTAG 1737 0.4301 MGPMLQTILTVLLLLMLLLIVIFLFFLFKPWRFFFSSRFLSSIKGELERPLFGDVGDASSFNRSNELPRDHDLEGACYPSEAHFRSPRTHGQVLVHKQRLQTLNMPQPQAADTLVVDVISDHSSSEDLDVGQTLKLPSSHLAQIQKHALPNFQIDRLQDFVQRDISDQRSCLTLEVISGPSQGLRYSVQSTSPSRLPLTLGRVSPSDLLIKDSEVSGKHAMIKWNLDKMKWELVDMGSLNGTLLNSTPINHPDTGSRNWGDPMNLTNGDIITLGTTSKVMVHITSQTQHHIPFGVGMASDPMALHRGGKRFPMEDVYYYQWPLPGLDQFGIFGICDGHCGDGAAKSASKLFPEIIASILSDSLKRERVLSHRDASDILREAFSQTEAHMNNYYEGCTATVLLVWTDGGENFFAQCANVGDSTCIMSVNGKQIKMSEDHKFTNYSERLRIEETGEPLKDGETRLYGINLARMLGDKFLKQQDSRFSSEPYISQVVHIDQASKAFAILASDGLWNVISVKKAIQLVLQMRERCYSERQNTAEKIASLLLNEAKTLRTKDNTSVIFLDFDTFNRFSCKVES 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02397 578 Pfam Protein phosphatase 2C 306 559 IPR001932 -
Gma01g02397 578 CDD FHA 172 280 IPR000253 GO:0005515
Gma01g02397 578 Gene3D - 166 302 - -
Gma01g02397 578 PANTHER PROTEIN PHOSPHATASE 2C 70 35 577 - -
Gma01g02397 578 PANTHER PROTEIN PHOSPHATASE 2C 35 577 IPR015655 GO:0004722|GO:0006470
Gma01g02397 578 SMART PP2C_4 288 564 IPR001932 -
Gma01g02397 578 SMART FHA_2 197 249 IPR000253 GO:0005515
Gma01g02397 578 Pfam FHA domain 199 274 IPR000253 GO:0005515
Gma01g02397 578 Gene3D - 303 575 IPR036457 -
Gma01g02397 578 SUPERFAMILY PP2C-like 303 567 IPR036457 -
Gma01g02397 578 SUPERFAMILY SMAD/FHA domain 170 281 IPR008984 GO:0005515
Gma01g02397 578 CDD PP2Cc 305 566 IPR001932 -
Gma01g02397 578 ProSiteProfiles PPM-type phosphatase domain profile. 294 566 IPR001932 -
Gma01g02397 578 ProSiteProfiles Forkhead-associated (FHA) domain profile. 198 249 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02397 Gma-Chr1 58720691 58726576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02397 26 568 PP2C-type Phosphatase Gene Family AT5G19280 55.867 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02397 K01090 - gmx:100170643 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02397 01 58720691 58726576 Gma11g00037 11 299312 304240 GST