Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02392 atggagcttcagaggcgtccagatcagtgcctcccggtgaggaaagggctgaagaggaagctagaggaggagttCGATGACGACCCACAGATCTCCGCTCCTCCCACCGGTGACGCTCGCGACGCCCTCCTATCTGACGTTAAGGAACAGGTTTCCCTCCTCGATTCCACTTTCTCCTGGAACGAACACGATCGTGCCGCCGCCAAGCGCGCCACGCACGCCCTCGCCGATCTCGCCAAAAACGAGGAAATCGTGAACGTGATTGTTGAAGGAGGCGCCATTCCGGCGTTGGTTAAGCATCTCCAAGCGCCTCCTCTGGCTGAAAGCGACCGTTTGCCGAGGCCAATGCCGTTCGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCGCTTGGACTTCTCGCTGTCAAGCCAGAGCATCAACAACTCATTGTTGACAGTGGTGCCTTAAAACATCTTGTTGATCTTTTGAAGAGGCATAAGAATGGCTTAACATCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCCATCACTAATCTTGCTCATGAGAACAGCAGCATTAAAACTCGTGTCAGGAAGGAAGGCGGGATTCCACCGCTTGTTCATTTGCTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCATTGCGAACCCTTGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCCCTTCCAACTCTTATTCTAATGCTTCGCTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTCATTGGAAATCTGGTCCACTCTTCCCCTGATATAAAGAAAGAAGTTCTTCTTGCTGGAGCCTTGCAACCTGTTATTGGACTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCAGCATTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTTCAGAGAGGTGCTGTCCGACCTCTGATAGAGATGCTTCAGTCCTCTGATGTTCAGCTAAAAGAAATGTCTGCCTTTGCATTGGGGAGATTAGCCCAGGACACACATAACCAAGCTGGTATTGTGCACAATGGTGGTTTGATGCCATTACTGAAGCTTCTTGACTCCAAAAATGGCTCTTTGCAACATAATGCTGCATTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGGTGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCATGGCCGAGTTCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGCTTTTCAAAGACGAGTTGCTTTAACTCTTGCTCACCTTTGCTCTGCAGATGATCAAAGAAAAATATTTATTGATTATAACGGTTTGGAGTTGCTTATGGGACTTCTTGGCTCTTATAACCCCAAGCAACAACTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCTATGACTCTGTCTCCTGTAGATGCCGCACCCCCATCTCCAACACCCCAGGTGTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTGTCTGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCACAGAATCTGCCTGCTTGCATCTTCAGACGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGAGGCACGGGACATAGAGATTCCAAACATTAGATGGGAGGTTTTTGAGCTGATGATGAGATTTATATACACTGGATCAGTAGATATCACTCTTGATATTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAGAAGGACTTAAAAGACTATGCGAGTACACAATTGCACAGGATATATCACTGGAGAATGTGTCAAGTATGTATGAACTTTCAGAGGCCTTTAACGCTATATCATTGAGGCACACATGCATCCTTTTTATATTGGAGCACTATGATAAATTGGGTGGAAAGCCAGGACACTCTCAACTGATTCAGCATATAATACCCGAGATCCAGAATTACTTTGTTAAAGCCATTACAAAGGCCAATTCCAATATCCAGCCGTAA 2121 0.4328 MELQRRPDQCLPVRKGLKRKLEEEFDDDPQISAPPTGDARDALLSDVKEQVSLLDSTFSWNEHDRAAAKRATHALADLAKNEEIVNVIVEGGAIPALVKHLQAPPLAESDRLPRPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRKEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPDIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLKEMSAFALGRLAQDTHNQAGIVHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQGGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALTLAHLCSADDQRKIFIDYNGLELLMGLLGSYNPKQQLDGAVALCKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFIYTGSVDITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEHYDKLGGKPGHSQLIQHIIPEIQNYFVKAITKANSNIQP 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02392 706 ProSiteProfiles BTB domain profile. 540 607 IPR000210 GO:0005515
Gma01g02392 706 CDD BTB_POZ_ARIA_plant 527 642 - -
Gma01g02392 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Gma01g02392 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 2 702 - -
Gma01g02392 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 148 IPR000225 GO:0005515
Gma01g02392 706 SMART arm_5 270 310 IPR000225 GO:0005515
Gma01g02392 706 SMART arm_5 312 352 IPR000225 GO:0005515
Gma01g02392 706 SMART arm_5 136 184 IPR000225 GO:0005515
Gma01g02392 706 SMART arm_5 228 268 IPR000225 GO:0005515
Gma01g02392 706 SMART arm_5 468 508 IPR000225 GO:0005515
Gma01g02392 706 SMART arm_5 81 135 IPR000225 GO:0005515
Gma01g02392 706 SMART arm_5 186 226 IPR000225 GO:0005515
Gma01g02392 706 SMART arm_5 353 393 IPR000225 GO:0005515
Gma01g02392 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Gma01g02392 706 SUPERFAMILY ARM repeat 64 410 IPR016024 -
Gma01g02392 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Gma01g02392 706 Gene3D Potassium Channel Kv1.1; Chain A 521 669 IPR011333 -
Gma01g02392 706 Gene3D - 269 412 IPR011989 -
Gma01g02392 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 197 IPR000225 GO:0005515
Gma01g02392 706 Pfam Armadillo/beta-catenin-like repeat 312 351 IPR000225 GO:0005515
Gma01g02392 706 Pfam Armadillo/beta-catenin-like repeat 192 225 IPR000225 GO:0005515
Gma01g02392 706 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Gma01g02392 706 SMART BTB_4 540 637 IPR000210 GO:0005515
Gma01g02392 706 Gene3D - 168 268 IPR011989 -
Gma01g02392 706 SUPERFAMILY POZ domain 532 634 IPR011333 -
Gma01g02392 706 Gene3D - 35 167 IPR011989 -
Gma01g02392 706 Gene3D - 417 514 IPR011989 -
Gma01g02392 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 2 702 IPR044282 -
Gma01g02392 706 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
Gma01g02392 706 SUPERFAMILY ARM repeat 438 509 IPR016024 -
Gma01g02392 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02392 Gma-Chr1 58693471 58700568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02392 168 412 U-box Gene Family AT1G23030 28.112 1.00e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gma01g02392 BTB 2.7e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02392 - - gmx:100812456 1374.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02392 01 58693471 58700568 Gma11g00040 11 315566 323757 GST
Gma01g02392 01 58693471 58700568 Gma10g02366 10 51282049 51291788 PCT
Gma01g02392 01 58693471 58700568 Gma20g01345 20 40440678 40448749 PCT
Gma10g02366 10 51282049 51291788 Gma01g02392 01 58693471 58700568 PCT
Gma20g01345 20 40440678 40448749 Gma01g02392 01 58693471 58700568 PCT